Mercurial > repos > galaxyp > openms_multiplexresolver

diff MultiplexResolver.xml @ 11:b3dcd2098472 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:07:55 +0000
parents 381448b2db6d
children 021fdb80f204
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--- a/MultiplexResolver.xml	Thu Sep 24 12:22:47 2020 +0000
+++ b/MultiplexResolver.xml	Tue Oct 13 20:07:55 2020 +0000
@@ -90,13 +90,13 @@
       <param name="ICPL10" argument="-labels:ICPL10" type="float" optional="true" min="0.0" value="115.0667" label="ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866" help=""/>
     </section>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
-      <option value="out_conflicts_FLAG">out_conflicts (ICPL:13C(6)2H(4)  |  H(-1) 2H(4) 13C(6) N O  |  unimod #866)</option>
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
+      <option value="out_conflicts_FLAG">out_conflicts (Optional output containing peptide multiplets without ID annotation or with conflicting quant/ID information)</option>
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -116,6 +116,6 @@
   <help><![CDATA[Completes peptide multiplets and resolves conflicts within them.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_MultiplexResolver.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_MultiplexResolver.html]]></help>
   <expand macro="references"/>
 </tool>