Mercurial > repos > galaxyp > openms_noisefiltergaussian

comparison NoiseFilterGaussian.xml @ 7:f3524fcfb491 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 07:54:12 -0400
parents 2f4e9645006b
children 4b6ea1de6dc4
comparison
equal deleted inserted replaced
6:181f7bb2d04d 7:f3524fcfb491
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>NoiseFilterGaussian 13 <command detect_errors="aggressive"><![CDATA[NoiseFilterGaussian
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
38 #end if 38 #end if
39 #if $adv_opts.param_force: 39 #if $adv_opts.param_force:
40 -force 40 -force
41 #end if 41 #end if
42 #end if 42 #end if
43 </command> 43 ]]></command>
44 <inputs> 44 <inputs>
45 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/> 45 <param name="param_in" type="data" format="mzml" optional="False" label="input raw data file" help="(-in) "/>
46 <param name="param_algorithm_gaussian_width" type="float" value="0.2" label="Use a gaussian filter width which has approximately the same width as your mass peaks (FWHM in m/z)" help="(-gaussian_width) "/> 46 <param name="param_algorithm_gaussian_width" type="float" value="0.2" label="Use a gaussian filter width which has approximately the same width as your mass peaks (FWHM in m/z)" help="(-gaussian_width) "/>
47 <param name="param_algorithm_ppm_tolerance" type="float" value="10.0" label="Gaussian width, depending on the m/z position" help="(-ppm_tolerance) &lt;br&gt;The higher the value, the wider the peak and therefore the wider the gaussian"/> 47 <param name="param_algorithm_ppm_tolerance" type="float" value="10.0" label="Gaussian width, depending on the m/z position" help="(-ppm_tolerance) &lt;br&gt;The higher the value, the wider the peak and therefore the wider the gaussian"/>
48 <param name="param_algorithm_use_ppm_tolerance" display="radio" type="boolean" truevalue="-algorithm:use_ppm_tolerance" falsevalue="" checked="false" optional="True" label="If true, instead of the gaussian_width value, the ppm_tolerance is used" help="(-use_ppm_tolerance) The gaussian is calculated in each step anew, so this is much slower"/> 48 <param name="param_algorithm_use_ppm_tolerance" display="radio" type="boolean" truevalue="-algorithm:use_ppm_tolerance" falsevalue="" checked="false" optional="True" label="If true, instead of the gaussian_width value, the ppm_tolerance is used" help="(-use_ppm_tolerance) The gaussian is calculated in each step anew, so this is much slower"/>
58 <data name="param_out" format="mzml"/> 58 <data name="param_out" format="mzml"/>
59 </outputs> 59 </outputs>
60 <help>Removes noise from profile spectra by using Gaussian filter (on uniform as well as non-uniform data). 60 <help>Removes noise from profile spectra by using Gaussian filter (on uniform as well as non-uniform data).
61 61
62 62
63 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_NoiseFilterGaussian.html</help> 63 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_NoiseFilterGaussian.html</help>
64 </tool> 64 </tool>