Mercurial > repos > galaxyp > openms_novoradapter

comparison readme.md @ 5:34dda034b019 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 3d1e5f37fd16524a415f707772eeb7ead848c5e3
author galaxyp
date Thu, 01 Dec 2022 19:20:30 +0000
parents 031adfb7fce0
children fa544e12732f
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4:031adfb7fce0 5:34dda034b019
72 72
73 The tools work by: 73 The tools work by:
74 74
75 Preprocessing: 75 Preprocessing:
76 76
77 - For each input / output data set parameter a directory is crated (named by
78 the parameter)
79 - For input data set parameters the links to the actual location of the data 77 - For input data set parameters the links to the actual location of the data
80 sets are created 78 sets are created, the link names are `element_identifier`.`EXT`, where `EXT`
79 is an extension that is known by OpenMS
80 - In order to avoid name collisions for the created links each is placed in a
81 unique directory: `PARAM_NAME/DATASET_ID`, where `PARAM_NAME` is the name
82 of the parameter and `DATASET_ID` is the id of the Galaxy dataset
83 - the same happens for output parameters that are in 1:1 correspondence with
84 an input parameter
85
81 86
82 Main: 87 Main:
83 88
84 - The galaxy wrapper create two json config files: one containing the 89 - The galaxy wrapper create two json config files: one containing the
85 parameters and the values chosen by the user and the other the values of 90 parameters and the values chosen by the user and the other the values of