Mercurial > repos > galaxyp > openms_openmsdatabasesinfo

comparison OpenMSDatabasesInfo.xml @ 1:ea9291282c0f draft default tip

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 5c080b1e2b99f1c88f4557e9fec8c45c9d23b906
author galaxyp
date Fri, 14 Jun 2024 21:42:34 +0000
parents a7ff1eeba91f
children
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0:a7ff1eeba91f 1:ea9291282c0f
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 1 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 2 <!--Proposed Tool Section: [[for Developers]]-->
4 <tool id="OpenMSDatabasesInfo" name="OpenMSDatabasesInfo" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05"> 3 <tool id="OpenMSDatabasesInfo" name="OpenMSDatabasesInfo" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
5 <description>Prints the content of OpenMS' enzyme and modification databases to TSV</description> 4 <description>Prints the content of OpenMS' enzyme and modification databases to TSV</description>
6 <macros> 5 <macros>
7 <token name="@EXECUTABLE@">OpenMSDatabasesInfo</token> 6 <token name="@EXECUTABLE@">OpenMSDatabasesInfo</token>
8 <import>macros.xml</import> 7 <import>macros.xml</import>
39 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile> 38 <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
40 </configfiles> 39 </configfiles>
41 <inputs> 40 <inputs>
42 <expand macro="adv_opts_macro"> 41 <expand macro="adv_opts_macro">
43 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> 42 <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
44 <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 43 <param argument="-test" type="hidden" value="False" label="Enables the test mode (needed for internal use only)" help="" optional="true">
45 <expand macro="list_string_san" name="test"/> 44 <expand macro="list_string_san" name="test"/>
46 </param> 45 </param>
47 </expand> 46 </expand>
48 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> 47 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
49 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 48 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
58 </outputs> 57 </outputs>
59 <tests/> 58 <tests/>
60 <help><![CDATA[Prints the content of OpenMS' enzyme and modification databases to TSV 59 <help><![CDATA[Prints the content of OpenMS' enzyme and modification databases to TSV
61 60
62 61
63 For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_OpenMSDatabasesInfo.html]]></help> 62 For more information, visit https://openms.de/doxygen/release/3.1.0/html/TOPP_OpenMSDatabasesInfo.html]]></help>
64 <expand macro="references"/> 63 <expand macro="references"/>
65 </tool> 64 </tool>