Mercurial > repos > galaxyp > openms_openpepxl

diff OpenPepXL.xml @ 5:e8ddd32f450b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 6e8b69ee3aff3c93f745a5de11cc9169130f2e5e"
author galaxyp
date Thu, 24 Sep 2020 12:35:30 +0000
parents a2a842b00f9c
children 40cc19c0dbd6
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line diff
--- a/OpenPepXL.xml	Thu Aug 27 19:37:50 2020 -0400
+++ b/OpenPepXL.xml	Thu Sep 24 12:35:30 2020 +0000
@@ -5371,20 +5371,6 @@
       <param name="missed_cleavages" argument="-peptide:missed_cleavages" type="integer" optional="true" value="2" label="Number of missed cleavages" help=""/>
       <param name="enzyme" argument="-peptide:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help="">
         <option value="Trypsin" selected="true">Trypsin</option>
-        <option value="Chymotrypsin">Chymotrypsin</option>
-        <option value="Chymotrypsin/P">Chymotrypsin/P</option>
-        <option value="CNBr">CNBr</option>
-        <option value="Formic_acid">Formic_acid</option>
-        <option value="Asp-N">Asp-N</option>
-        <option value="Lys-C">Lys-C</option>
-        <option value="Lys-N">Lys-N</option>
-        <option value="Lys-C/P">Lys-C/P</option>
-        <option value="Arg-C/P">Arg-C/P</option>
-        <option value="Arg-C">Arg-C</option>
-        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
-        <option value="2-iodobenzoate">2-iodobenzoate</option>
-        <option value="iodosobenzoate">iodosobenzoate</option>
-        <option value="staphylococcal protease/D">staphylococcal protease/D</option>
         <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
         <option value="Glu-C+P">Glu-C+P</option>
         <option value="PepsinA + P">PepsinA + P</option>
@@ -5393,16 +5379,30 @@
         <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option>
         <option value="no cleavage">no cleavage</option>
         <option value="unspecific cleavage">unspecific cleavage</option>
+        <option value="Asp-N/B">Asp-N/B</option>
+        <option value="Asp-N_ambic">Asp-N_ambic</option>
+        <option value="Chymotrypsin">Chymotrypsin</option>
+        <option value="Chymotrypsin/P">Chymotrypsin/P</option>
+        <option value="CNBr">CNBr</option>
+        <option value="Formic_acid">Formic_acid</option>
+        <option value="Lys-C">Lys-C</option>
+        <option value="Asp-N">Asp-N</option>
         <option value="PepsinA">PepsinA</option>
         <option value="TrypChymo">TrypChymo</option>
         <option value="Trypsin/P">Trypsin/P</option>
+        <option value="Arg-C/P">Arg-C/P</option>
+        <option value="Arg-C">Arg-C</option>
         <option value="V8-DE">V8-DE</option>
         <option value="V8-E">V8-E</option>
         <option value="leukocyte elastase">leukocyte elastase</option>
         <option value="proline endopeptidase">proline endopeptidase</option>
         <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
-        <option value="Asp-N/B">Asp-N/B</option>
-        <option value="Asp-N_ambic">Asp-N_ambic</option>
+        <option value="Alpha-lytic protease">Alpha-lytic protease</option>
+        <option value="2-iodobenzoate">2-iodobenzoate</option>
+        <option value="iodosobenzoate">iodosobenzoate</option>
+        <option value="staphylococcal protease/D">staphylococcal protease/D</option>
+        <option value="Lys-N">Lys-N</option>
+        <option value="Lys-C/P">Lys-C/P</option>
         <expand macro="list_string_san"/>
       </param>
     </section>