Mercurial > repos > galaxyp > openms_openpepxl

diff OpenPepXL.xml @ 2:ec2524b5a07a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 05:01:49 -0400
parents f333faf508bb
children a2a842b00f9c
line wrap: on
line diff
--- a/OpenPepXL.xml	Tue Mar 20 15:18:56 2018 -0400
+++ b/OpenPepXL.xml	Fri May 17 05:01:49 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenPepXL
+  <command detect_errors="aggressive"><![CDATA[OpenPepXL
 
 #if $param_in:
   -in $param_in
@@ -162,7 +162,7 @@
   -precursor:max_charge $adv_opts.param_precursor_max_charge
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="Input file containing the spectra" help="(-in) "/>
     <param name="param_consensus" type="data" format="consensusxml" optional="False" label="Input file containing the linked mass peaks" help="(-consensus) "/>
@@ -5340,5 +5340,5 @@
   <help>Tool for protein-protein cross-linking identification using labeled linkers.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenPepXL.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenPepXL.html</help>
 </tool>