Mercurial > repos > galaxyp > openms_openswathanalyzer

diff OpenSwathAnalyzer.xml @ 7:9f0a3a6b5df6 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:52:46 -0400
parents de254355ce13
children bc57c90ba60f
line wrap: on
line diff
--- a/OpenSwathAnalyzer.xml	Tue Mar 20 15:14:41 2018 -0400
+++ b/OpenSwathAnalyzer.xml	Fri May 17 04:52:46 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>OpenSwathAnalyzer
+  <command detect_errors="aggressive"><![CDATA[OpenSwathAnalyzer
 
 #if $param_in:
   -in $param_in
@@ -288,7 +288,7 @@
   -algorithm:Scores:use_uis_scores
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file containing the chromatograms" help="(-in) "/>
     <param name="param_tr" type="data" format="traml" optional="False" label="transition file" help="(-tr) "/>
@@ -420,5 +420,5 @@
   <help>Picks peaks and finds features in an SWATH-MS or SRM experiment.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathAnalyzer.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathAnalyzer.html</help>
 </tool>