Mercurial > repos > galaxyp > openms_openswathassaygenerator

comparison OpenSwathAssayGenerator.xml @ 7:63a26a130c5d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:04:31 -0400
parents 462eb95f7382
children 5848492bfc5a
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equal deleted inserted replaced
6:026becd84c5b 7:63a26a130c5d
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathAssayGenerator 13 <command detect_errors="aggressive"><![CDATA[OpenSwathAssayGenerator
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out: 18 #if $param_out:
81 #end if 81 #end if
82 #if $adv_opts.param_force: 82 #if $adv_opts.param_force:
83 -force 83 -force
84 #end if 84 #end if
85 #end if 85 #end if
86 </command> 86 ]]></command>
87 <inputs> 87 <inputs>
88 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/> 88 <param name="param_in" type="data" format="traml" optional="False" label="input file ('traML')" help="(-in) "/>
89 <param name="param_min_transitions" type="integer" value="6" label="minimal number of transitions" help="(-min_transitions) "/> 89 <param name="param_min_transitions" type="integer" value="6" label="minimal number of transitions" help="(-min_transitions) "/>
90 <param name="param_max_transitions" type="integer" value="6" label="maximal number of transitions" help="(-max_transitions) "/> 90 <param name="param_max_transitions" type="integer" value="6" label="maximal number of transitions" help="(-max_transitions) "/>
91 <param name="param_allowed_fragment_types" type="text" size="30" value="b,y" label="allowed fragment types" help="(-allowed_fragment_types) "> 91 <param name="param_allowed_fragment_types" type="text" size="30" value="b,y" label="allowed fragment types" help="(-allowed_fragment_types) ">
128 <data name="param_out" format="traml"/> 128 <data name="param_out" format="traml"/>
129 </outputs> 129 </outputs>
130 <help>Generates assays according to different models for a specific TraML 130 <help>Generates assays according to different models for a specific TraML
131 131
132 132
133 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_OpenSwathAssayGenerator.html</help> 133 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_OpenSwathAssayGenerator.html</help>
134 </tool> 134 </tool>