Mercurial > repos > galaxyp > openms_openswathassaygenerator

diff OpenSwathAssayGenerator.xml @ 11:a41cd777ced9 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:09:00 +0000
parents 5848492bfc5a
children de7a553552a6
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--- a/OpenSwathAssayGenerator.xml	Thu Sep 24 10:02:44 2020 +0000
+++ b/OpenSwathAssayGenerator.xml	Tue Oct 13 20:09:00 2020 +0000
@@ -89,12 +89,12 @@
       <param name="disable_identification_specific_losses" argument="-disable_identification_specific_losses" type="boolean" truevalue="true" falsevalue="false" checked="false" label="IPF: set this flag if specific neutral losses for identification fragment ions should not be allowed" help=""/>
       <param name="enable_identification_unspecific_losses" argument="-enable_identification_unspecific_losses" type="boolean" truevalue="true" falsevalue="false" checked="false" label="IPF: set this flag if unspecific neutral losses (H2O1, H3N1, C1H2N2, C1H2N1O1) for identification fragment ions should be allowed" help=""/>
       <param name="enable_swath_specifity" argument="-enable_swath_specifity" type="boolean" truevalue="true" falsevalue="false" checked="false" label="IPF: set this flag if identification transitions without precursor specificity" help="(i.e. across whole precursor isolation window instead of precursor MZ) should be generated"/>
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -117,6 +117,6 @@
   <help><![CDATA[Generates assays according to different models for a specific TraML
 
 
-For more information, visit http://www.openms.de/documentation/TOPP_OpenSwathAssayGenerator.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_OpenSwathAssayGenerator.html]]></help>
   <expand macro="references"/>
 </tool>