Mercurial > repos > galaxyp > openms_openswathchromatogramextractor

comparison OpenSwathChromatogramExtractor.xml @ 11:71555764c24a draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:01:42 +0000
parents e9c148b32f87
children f78d734b7c01
comparison
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10:e322e005450c 11:71555764c24a
77 <param name="extraction_function" argument="-extraction_function" display="radio" type="select" optional="false" label="Function used to extract the signal" help=""> 77 <param name="extraction_function" argument="-extraction_function" display="radio" type="select" optional="false" label="Function used to extract the signal" help="">
78 <option value="tophat" selected="true">tophat</option> 78 <option value="tophat" selected="true">tophat</option>
79 <option value="bartlett">bartlett</option> 79 <option value="bartlett">bartlett</option>
80 <expand macro="list_string_san"/> 80 <expand macro="list_string_san"/>
81 </param> 81 </param>
82 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 82 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
83 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 83 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
84 <expand macro="list_string_san"/> 84 <expand macro="list_string_san"/>
85 </param> 85 </param>
86 </expand> 86 </expand>
87 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 87 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
88 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 88 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
89 </param> 89 </param>
90 </inputs> 90 </inputs>
91 <outputs> 91 <outputs>
92 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 92 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
99 <expand macro="manutest_OpenSwathChromatogramExtractor"/> 99 <expand macro="manutest_OpenSwathChromatogramExtractor"/>
100 </tests> 100 </tests>
101 <help><![CDATA[Extract chromatograms (XIC) from a MS2 map file. 101 <help><![CDATA[Extract chromatograms (XIC) from a MS2 map file.
102 102
103 103
104 For more information, visit http://www.openms.de/documentation/TOPP_OpenSwathChromatogramExtractor.html]]></help> 104 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_OpenSwathChromatogramExtractor.html]]></help>
105 <expand macro="references"/> 105 <expand macro="references"/>
106 </tool> 106 </tool>