Mercurial > repos > galaxyp > openms_openswathconfidencescoring

comparison OpenSwathConfidenceScoring.xml @ 11:fa73919cc97e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:18:53 +0000
parents 401b29d0f88c
children c1809c05ae8c
comparison
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10:e8f64a7dc470 11:fa73919cc97e
62 <param name="intercept" argument="-GLM:intercept" type="float" optional="true" value="3.87333466" label="Intercept term" help=""/> 62 <param name="intercept" argument="-GLM:intercept" type="float" optional="true" value="3.87333466" label="Intercept term" help=""/>
63 <param name="delta_rt" argument="-GLM:delta_rt" type="float" optional="true" value="-0.02898629" label="Coefficient of retention time difference" help=""/> 63 <param name="delta_rt" argument="-GLM:delta_rt" type="float" optional="true" value="-0.02898629" label="Coefficient of retention time difference" help=""/>
64 <param name="dist_int" argument="-GLM:dist_int" type="float" optional="true" value="-7.75880768" label="Coefficient of intensity distance" help=""/> 64 <param name="dist_int" argument="-GLM:dist_int" type="float" optional="true" value="-7.75880768" label="Coefficient of intensity distance" help=""/>
65 </section> 65 </section>
66 <expand macro="adv_opts_macro"> 66 <expand macro="adv_opts_macro">
67 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 67 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
68 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 68 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
69 <expand macro="list_string_san"/> 69 <expand macro="list_string_san"/>
70 </param> 70 </param>
71 </expand> 71 </expand>
72 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 72 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
73 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 73 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
74 </param> 74 </param>
75 </inputs> 75 </inputs>
76 <outputs> 76 <outputs>
77 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/> 77 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/>
84 <expand macro="manutest_OpenSwathConfidenceScoring"/> 84 <expand macro="manutest_OpenSwathConfidenceScoring"/>
85 </tests> 85 </tests>
86 <help><![CDATA[Compute confidence scores for OpenSwath results 86 <help><![CDATA[Compute confidence scores for OpenSwath results
87 87
88 88
89 For more information, visit http://www.openms.de/documentation/TOPP_OpenSwathConfidenceScoring.html]]></help> 89 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_OpenSwathConfidenceScoring.html]]></help>
90 <expand macro="references"/> 90 <expand macro="references"/>
91 </tool> 91 </tool>