Mercurial > repos > galaxyp > openms_openswathdiaprescoring

diff OMSSAAdapter.patch @ 9:e6ba7a995b35 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:25:20 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OMSSAAdapter.patch	Tue Oct 13 20:25:20 2020 +0000
@@ -0,0 +1,10 @@
+--- OMSSAAdapter.xml	2020-06-16 15:51:40.315400730 +0200
++++ /tmp/OMSSAAdapter.xml	2020-06-16 15:50:23.536086074 +0200
+@@ -22,6 +22,7 @@
+ mkdir database &&
+ ln -s '$database' 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
+ 
++makeblastdb -dbtype prot -in 'database/${re.sub("[^\w\-_]", "_", $database.element_identifier)}.$gxy2omsext($database.ext)' &&
+ ## Main program call
+ 
+ set -o pipefail &&