Mercurial > repos > galaxyp > openms_openswathfilesplitter

comparison OpenSwathFileSplitter.xml @ 7:508e1f473cfe draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:23:52 -0400
parents c88d8b0697d8
children 0ab17cc5cf0c
comparison
equal deleted inserted replaced
6:feb421396b40 7:508e1f473cfe
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathFileSplitter 13 <command detect_errors="aggressive"><![CDATA[OpenSwathFileSplitter
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
23 #if $adv_opts.param_force: 23 #if $adv_opts.param_force:
24 -force 24 -force
25 #end if 25 #end if
26 #end if 26 #end if
27 &gt; $param_stdout 27 &gt; $param_stdout
28 </command> 28 ]]></command>
29 <inputs> 29 <inputs>
30 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) "> 30 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input file (SWATH/DIA file)" help="(-in) ">
31 <sanitizer> 31 <sanitizer>
32 <valid initial="string.printable"> 32 <valid initial="string.printable">
33 <remove value="'"/> 33 <remove value="'"/>
51 <data name="param_stdout" format="txt" label="Output from stdout"/> 51 <data name="param_stdout" format="txt" label="Output from stdout"/>
52 </outputs> 52 </outputs>
53 <help>Splits SWATH files into n files, each containing one window. 53 <help>Splits SWATH files into n files, each containing one window.
54 54
55 55
56 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathFileSplitter.html</help> 56 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathFileSplitter.html</help>
57 </tool> 57 </tool>