Mercurial > repos > galaxyp > openms_openswathmzmlfilecacher

comparison OpenSwathMzMLFileCacher.xml @ 0:5a7e590eb955 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 12:51:06 -0500
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children 22820a211fe8
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-1:000000000000 0:5a7e590eb955
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: []-->
4 <tool id="OpenSwathMzMLFileCacher" name="OpenSwathMzMLFileCacher" version="2.1.0">
5 <description>This tool caches the spectra and chromatogram data of an mzML to disk.</description>
6 <macros>
7 <token name="@EXECUTABLE@">OpenSwathMzMLFileCacher</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>OpenSwathMzMLFileCacher
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_out:
19 -out $param_out
20 #end if
21 #if $param_convert_back:
22 -convert_back
23 #end if
24 #if $adv_opts.adv_opts_selector=='advanced':
25 #if $adv_opts.param_force:
26 -force
27 #end if
28 #end if
29 </command>
30 <inputs>
31 <param name="param_in" type="data" format="mzml" optional="False" label="transition file ('csv')" help="(-in) "/>
32 <param name="param_convert_back" display="radio" type="boolean" truevalue="-convert_back" falsevalue="" checked="false" optional="True" label="Convert back to mzML" help="(-convert_back) "/>
33 <expand macro="advanced_options">
34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
35 </expand>
36 </inputs>
37 <outputs>
38 <data name="param_out" format="data"/>
39 </outputs>
40 <help>This tool caches the spectra and chromatogram data of an mzML to disk.
41
42
43 For more information, visit </help>
44 </tool>