Mercurial > repos > galaxyp > openms_openswathmzmlfilecacher

diff OpenSwathMzMLFileCacher.xml @ 11:fc775d5aa321 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:00:16 +0000
parents e7c43d17e3dc
children f82b320ceb90
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line diff
--- a/OpenSwathMzMLFileCacher.xml	Thu Sep 24 12:34:30 2020 +0000
+++ b/OpenSwathMzMLFileCacher.xml	Tue Oct 13 20:00:16 2020 +0000
@@ -53,12 +53,12 @@
       <param name="lossy_mass_accuracy" argument="-lossy_mass_accuracy" type="float" optional="true" value="-1.0" label="Desired (absolute) m/z accuracy for lossy compression" help="(e.g. use 0.0001 for a mass accuracy of 0.2 ppm at 500 m/z, default uses -1.0 for maximal accuracy)"/>
       <param name="process_lowmemory" argument="-process_lowmemory" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Whether to process the file on the fly without loading the whole file into memory first (only for conversions of mzXML/mzML to mzML)" help="Note: this flag will prevent conversion from spectra to chromatograms"/>
       <param name="lowmem_batchsize" argument="-lowmem_batchsize" type="integer" optional="true" min="0" value="500" label="The batch size of the low memory conversion" help=""/>
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -80,6 +80,6 @@
   <help><![CDATA[This tool caches the spectra and chromatogram data of an mzML to disk.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_OpenSwathMzMLFileCacher.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_OpenSwathMzMLFileCacher.html]]></help>
   <expand macro="references"/>
 </tool>