Mercurial > repos > galaxyp > openms_openswathworkflow

comparison OpenSwathWorkflow.xml @ 7:091d4e82839a draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:30:28 -0400
parents 56988709dec6
children 3967f7cf35b9
comparison
equal deleted inserted replaced
6:94d245e69164 7:091d4e82839a
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>OpenSwathWorkflow 13 <command detect_errors="aggressive"><![CDATA[OpenSwathWorkflow
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
397 #end if 397 #end if
398 #if $adv_opts.param_Scoring_Scores_use_uis_scores: 398 #if $adv_opts.param_Scoring_Scores_use_uis_scores:
399 -Scoring:Scores:use_uis_scores 399 -Scoring:Scores:use_uis_scores
400 #end if 400 #end if
401 #end if 401 #end if
402 </command> 402 ]]></command>
403 <inputs> 403 <inputs>
404 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) "> 404 <param name="param_in" type="data" format="mzml,mzxml" multiple="true" optional="False" size="30" label="Input files separated by blank" help="(-in) ">
405 <sanitizer> 405 <sanitizer>
406 <valid initial="string.printable"> 406 <valid initial="string.printable">
407 <remove value="'"/> 407 <remove value="'"/>
592 <data name="param_out_chrom" format="mzml"/> 592 <data name="param_out_chrom" format="mzml"/>
593 </outputs> 593 </outputs>
594 <help>Complete workflow to run OpenSWATH 594 <help>Complete workflow to run OpenSWATH
595 595
596 596
597 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_OpenSwathWorkflow.html</help> 597 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_OpenSwathWorkflow.html</help>
598 </tool> 598 </tool>