Mercurial > repos > galaxyp > openms_peakpickerhires

diff PeakPickerHiRes.xml @ 7:3d8d4ada5405 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author galaxyp
date Fri, 17 May 2019 10:19:28 -0400
parents d34c1a10e713
children 146b59d2d3e5
line wrap: on
line diff
--- a/PeakPickerHiRes.xml	Tue Mar 20 15:21:06 2018 -0400
+++ b/PeakPickerHiRes.xml	Fri May 17 10:19:28 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PeakPickerHiRes
+  <command detect_errors="aggressive"><![CDATA[PeakPickerHiRes
 
 #if $param_in:
   -in $param_in
@@ -97,7 +97,7 @@
   -algorithm:SignalToNoise:noise_for_empty_window $adv_opts.param_algorithm_SignalToNoise_noise_for_empty_window
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input profile data file" help="(-in) "/>
     <param name="param_algorithm_signal_to_noise" type="float" min="0.0" optional="True" value="0.0" label="Minimal signal-to-noise ratio for a peak to be picked (0.0 disables SNT estimation!)" help="(-signal_to_noise) "/>
@@ -145,5 +145,5 @@
   <help>Finds mass spectrometric peaks in profile mass spectra.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PeakPickerHiRes.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PeakPickerHiRes.html</help>
 </tool>