Mercurial > repos > galaxyp > openms_peakpickeriterative
comparison PeakPickerIterative.xml @ 11:0c37d0660a6b draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:33:05 +0000 |
parents | 4bb4e2db2e77 |
children | 9547baeca6a1 |
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10:911e9dda3eb2 | 11:0c37d0660a6b |
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52 <param name="check_width_internally" argument="-algorithm:check_width_internally" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Delete peaks where the spacing is larger than the peak width (should be set to true to avoid artefacts)" help=""/> | 52 <param name="check_width_internally" argument="-algorithm:check_width_internally" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Delete peaks where the spacing is larger than the peak width (should be set to true to avoid artefacts)" help=""/> |
53 <param name="ms1_only" argument="-algorithm:ms1_only" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Only do MS1" help=""/> | 53 <param name="ms1_only" argument="-algorithm:ms1_only" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Only do MS1" help=""/> |
54 <param name="clear_meta_data" argument="-algorithm:clear_meta_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Delete meta data about peak width" help=""/> | 54 <param name="clear_meta_data" argument="-algorithm:clear_meta_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Delete meta data about peak width" help=""/> |
55 </section> | 55 </section> |
56 <expand macro="adv_opts_macro"> | 56 <expand macro="adv_opts_macro"> |
57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 57 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 58 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
59 <expand macro="list_string_san"/> | 59 <expand macro="list_string_san"/> |
60 </param> | 60 </param> |
61 </expand> | 61 </expand> |
62 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 62 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 63 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
64 </param> | 64 </param> |
65 </inputs> | 65 </inputs> |
66 <outputs> | 66 <outputs> |
67 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> | 67 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> |
74 <expand macro="manutest_PeakPickerIterative"/> | 74 <expand macro="manutest_PeakPickerIterative"/> |
75 </tests> | 75 </tests> |
76 <help><![CDATA[Finds mass spectrometric peaks in profile mass spectra. | 76 <help><![CDATA[Finds mass spectrometric peaks in profile mass spectra. |
77 | 77 |
78 | 78 |
79 For more information, visit http://www.openms.de/documentation/UTILS_PeakPickerIterative.html]]></help> | 79 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_PeakPickerIterative.html]]></help> |
80 <expand macro="references"/> | 80 <expand macro="references"/> |
81 </tool> | 81 </tool> |