Mercurial > repos > galaxyp > openms_peakpickeriterative

diff PeakPickerIterative.xml @ 7:eab30c6f4d08 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:29:51 -0400
parents 57ab47a36532
children 4bb4e2db2e77
line wrap: on
line diff
--- a/PeakPickerIterative.xml	Tue Mar 20 14:59:08 2018 -0400
+++ b/PeakPickerIterative.xml	Wed May 15 08:29:51 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PeakPickerIterative
+  <command detect_errors="aggressive"><![CDATA[PeakPickerIterative
 
 #if $param_in:
   -in $param_in
@@ -50,7 +50,7 @@
   -algorithm:check_width_internally
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_algorithm_signal_to_noise_" type="float" value="1.0" label="Signal to noise value, each peak is required to be above this value (turn off by setting it to 0.0)" help="(-signal_to_noise_) "/>
@@ -72,5 +72,5 @@
   <help>Finds mass spectrometric peaks in profile mass spectra.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_PeakPickerIterative.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_PeakPickerIterative.html</help>
 </tool>