Mercurial > repos > galaxyp > openms_peakpickerwavelet

comparison PeakPickerWavelet.xml @ 11:341af0b11af9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:53:57 +0000
parents bf3353f27d33
children 2077efa205de
comparison
equal deleted inserted replaced
10:9e47c4855b18 11:341af0b11af9
103 <param name="noise_for_empty_window" argument="-algorithm:SignalToNoiseEstimationParameter:noise_for_empty_window" type="float" optional="true" value="1e+20" label="noise value used for sparse windows" help=""/> 103 <param name="noise_for_empty_window" argument="-algorithm:SignalToNoiseEstimationParameter:noise_for_empty_window" type="float" optional="true" value="1e+20" label="noise value used for sparse windows" help=""/>
104 </section> 104 </section>
105 </section> 105 </section>
106 <expand macro="adv_opts_macro"> 106 <expand macro="adv_opts_macro">
107 <param name="write_peak_meta_data" argument="-write_peak_meta_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Write additional information about the picked peaks (maximal intensity, left and right area...) into the mzML-file" help="Attention: this can blow up files, since seven arrays are stored per spectrum!"/> 107 <param name="write_peak_meta_data" argument="-write_peak_meta_data" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Write additional information about the picked peaks (maximal intensity, left and right area...) into the mzML-file" help="Attention: this can blow up files, since seven arrays are stored per spectrum!"/>
108 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 108 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
109 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 109 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
110 <expand macro="list_string_san"/> 110 <expand macro="list_string_san"/>
111 </param> 111 </param>
112 </expand> 112 </expand>
113 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 113 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
114 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 114 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
115 </param> 115 </param>
116 </inputs> 116 </inputs>
117 <outputs> 117 <outputs>
118 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 118 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
125 <expand macro="manutest_PeakPickerWavelet"/> 125 <expand macro="manutest_PeakPickerWavelet"/>
126 </tests> 126 </tests>
127 <help><![CDATA[Finds mass spectrometric peaks in profile mass spectra. 127 <help><![CDATA[Finds mass spectrometric peaks in profile mass spectra.
128 128
129 129
130 For more information, visit http://www.openms.de/documentation/TOPP_PeakPickerWavelet.html]]></help> 130 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_PeakPickerWavelet.html]]></help>
131 <expand macro="references"/> 131 <expand macro="references"/>
132 </tool> 132 </tool>