Mercurial > repos > galaxyp > openms_percolatoradapter

comparison PercolatorAdapter.xml @ 2:4ed4e0b7f57c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:20:02 -0400
parents 0e7bb87aa55c
children e7881a82b56d
comparison
equal deleted inserted replaced
1:b09b1b9304d3 2:4ed4e0b7f57c
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>PercolatorAdapter 13 <command detect_errors="aggressive"><![CDATA[PercolatorAdapter
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
109 #end if 109 #end if
110 #if $adv_opts.param_force: 110 #if $adv_opts.param_force:
111 -force 111 -force
112 #end if 112 #end if
113 #end if 113 #end if
114 </command> 114 ]]></command>
115 <inputs> 115 <inputs>
116 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) "> 116 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) ">
117 <sanitizer> 117 <sanitizer>
118 <valid initial="string.printable"> 118 <valid initial="string.printable">
119 <remove value="'"/> 119 <remove value="'"/>
190 <data name="param_weights" format="data"/> 190 <data name="param_weights" format="data"/>
191 </outputs> 191 </outputs>
192 <help>Facilitate input to Percolator and reintegrate. 192 <help>Facilitate input to Percolator and reintegrate.
193 193
194 194
195 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PercolatorAdapter.html</help> 195 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PercolatorAdapter.html</help>
196 </tool> 196 </tool>