Mercurial > repos > galaxyp > openms_proteinresolver

comparison ProteinResolver.xml @ 7:6cf5aa34e245 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:08:48 -0400
parents dc9abec0379f
children 814d6f4706e3
comparison
equal deleted inserted replaced
6:6c4318671e0d 7:6cf5aa34e245
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>ProteinResolver 13 <command detect_errors="aggressive"><![CDATA[ProteinResolver
14 14
15 #if $param_fasta: 15 #if $param_fasta:
16 -fasta $param_fasta 16 -fasta $param_fasta
17 #end if 17 #end if
18 -in 18 -in
68 #if $adv_opts.adv_opts_selector=='advanced': 68 #if $adv_opts.adv_opts_selector=='advanced':
69 #if $adv_opts.param_force: 69 #if $adv_opts.param_force:
70 -force 70 -force
71 #end if 71 #end if
72 #end if 72 #end if
73 </command> 73 ]]></command>
74 <inputs> 74 <inputs>
75 <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/> 75 <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/>
76 <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) "> 76 <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) ">
77 <sanitizer> 77 <sanitizer>
78 <valid initial="string.printable"> 78 <valid initial="string.printable">
128 <data name="param_additional_info" format="tabular"/> 128 <data name="param_additional_info" format="tabular"/>
129 </outputs> 129 </outputs>
130 <help>protein inference 130 <help>protein inference
131 131
132 132
133 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_ProteinResolver.html</help> 133 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_ProteinResolver.html</help>
134 </tool> 134 </tool>