diff test-data/MzMLSplitter_output_part2.mzML @ 6:6c4318671e0d draft

planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 981be1bde91d6d565693cd691553f77465e653bb
author galaxyp
date Tue, 20 Mar 2018 14:42:02 -0400
parents
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/MzMLSplitter_output_part2.mzML	Tue Mar 20 14:42:02 2018 -0400
@@ -0,0 +1,222 @@
+<?xml version="1.0" encoding="ISO-8859-1"?>
+<indexedmzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0_idx.xsd">
+<mzML xmlns="http://psi.hupo.org/ms/mzml" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://psi.hupo.org/ms/mzml http://psidev.info/files/ms/mzML/xsd/mzML1.1.0.xsd" accession="" version="1.1.0">
+	<cvList count="5">
+		<cv id="MS" fullName="Proteomics Standards Initiative Mass Spectrometry Ontology" URI="http://psidev.cvs.sourceforge.net/*checkout*/psidev/psi/psi-ms/mzML/controlledVocabulary/psi-ms.obo"/>
+		<cv id="UO" fullName="Unit Ontology" URI="http://obo.cvs.sourceforge.net/obo/obo/ontology/phenotype/unit.obo"/>
+		<cv id="BTO" fullName="BrendaTissue545" version="unknown" URI="http://www.brenda-enzymes.info/ontology/tissue/tree/update/update_files/BrendaTissueOBO"/>
+		<cv id="GO" fullName="Gene Ontology - Slim Versions" version="unknown" URI="http://www.geneontology.org/GO_slims/goslim_goa.obo"/>
+		<cv id="PATO" fullName="Quality ontology" version="unknown" URI="http://obo.cvs.sourceforge.net/*checkout*/obo/obo/ontology/phenotype/quality.obo"/>
+	</cvList>
+	<fileDescription>
+		<fileContent>
+			<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
+		</fileContent>
+		<contact>
+			<cvParam cvRef="MS" accession="MS:1000586" name="contact name" value=", " />
+			<cvParam cvRef="MS" accession="MS:1000590" name="contact affiliation" value="" />
+		</contact>
+	</fileDescription>
+	<sampleList count="1">
+		<sample id="sa_0" name="">
+			<cvParam cvRef="MS" accession="MS:1000004" name="sample mass" value="0" unitAccession="UO:0000021" unitName="gram" unitCvRef="UO" />
+			<cvParam cvRef="MS" accession="MS:1000005" name="sample volume" value="0" unitAccession="UO:0000098" unitName="milliliter" unitCvRef="UO" />
+			<cvParam cvRef="MS" accession="MS:1000006" name="sample concentration" value="0" unitAccession="UO:0000175" unitName="gram per liter" unitCvRef="UO" />
+		</sample>
+	</sampleList>
+	<softwareList count="4">
+		<software id="so_in_0" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_default" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_dp_sp_0_pm_0" version="" >
+			<cvParam cvRef="MS" accession="MS:1000799" name="custom unreleased software tool" value="" />
+		</software>
+		<software id="so_dp_sp_0_pm_1" version="version_string" >
+			<cvParam cvRef="MS" accession="MS:1000756" name="FileConverter" />
+		</software>
+	</softwareList>
+	<instrumentConfigurationList count="1">
+		<instrumentConfiguration id="ic_0">
+			<cvParam cvRef="MS" accession="MS:1000031" name="instrument model" />
+			<componentList count="3">
+				<source order="0">
+					<cvParam cvRef="MS" accession="MS:1000008" name="ionization type" />
+				</source>
+				<analyzer order="0">
+					<cvParam cvRef="MS" accession="MS:1000014" name="accuracy" value="0" unitAccession="UO:0000169" unitName="parts per million" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000022" name="TOF Total Path Length" value="0" unitAccession="UO:0000008" unitName="meter" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000024" name="final MS exponent" value="0" />
+					<cvParam cvRef="MS" accession="MS:1000025" name="magnetic field strength" value="0" unitAccession="UO:0000228" unitName="tesla" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000443" name="mass analyzer type" />
+				</analyzer>
+				<detector order="0">
+					<cvParam cvRef="MS" accession="MS:1000028" name="detector resolution" value="0" />
+					<cvParam cvRef="MS" accession="MS:1000029" name="sampling frequency" value="0" unitAccession="UO:0000106" unitName="hertz" unitCvRef="UO" />
+					<cvParam cvRef="MS" accession="MS:1000026" name="detector type" />
+				</detector>
+			</componentList>
+			<softwareRef ref="so_in_0" />
+		</instrumentConfiguration>
+	</instrumentConfigurationList>
+	<dataProcessingList count="1">
+		<dataProcessing id="dp_sp_0">
+			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_0">
+				<cvParam cvRef="MS" accession="MS:1000543" name="data processing action" />
+			</processingMethod>
+			<processingMethod order="0" softwareRef="so_dp_sp_0_pm_1">
+				<cvParam cvRef="MS" accession="MS:1000544" name="Conversion to mzML" />
+				<cvParam cvRef="MS" accession="MS:1000747" name="completion time" value="1999-12-31+23:59" />
+				<userParam name="parameter: mode" type="xsd:string" value="test_mode"/>
+			</processingMethod>
+		</dataProcessing>
+	</dataProcessingList>
+	<run id="ru_0" defaultInstrumentConfigurationRef="ic_0" sampleRef="sa_0">
+		<spectrumList count="5" defaultDataProcessingRef="dp_sp_0">
+			<spectrum id="spectrum=6" index="0" defaultArrayLength="885" dataProcessingRef="dp_sp_0">
+				<cvParam cvRef="MS" accession="MS:1000525" name="spectrum representation" />
+				<cvParam cvRef="MS" accession="MS:1000511" name="ms level" value="1" />
+				<cvParam cvRef="MS" accession="MS:1000294" name="mass spectrum" />
+				<cvParam cvRef="MS" accession="MS:1000130" name="positive scan" />
+				<scanList count="1">
+					<cvParam cvRef="MS" accession="MS:1000795" name="no combination" />
+					<scan >
+						<cvParam cvRef="MS" accession="MS:1000016" name="scan start time" value="31.2627" unitAccession="UO:0000010" unitName="second" unitCvRef="UO" />
+					</scan>
+				</scanList>
+				<binaryDataArrayList count="2">
+					<binaryDataArray encodedLength="9440">
+						<cvParam cvRef="MS" accession="MS:1000514" name="m/z array" unitAccession="MS:1000040" unitName="m/z" unitCvRef="MS" />
+						<cvParam cvRef="MS" accession="MS:1000523" name="64-bit float" />
+						<cvParam cvRef="MS" accession="MS:1000576" name="no compression" />
+						<binary>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+					</binaryDataArray>
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+						<cvParam cvRef="MS" accession="MS:1000515" name="intensity array" unitAccession="MS:1000131" unitName="number of detector counts" unitCvRef="MS"/>
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