Mercurial > repos > galaxyp > openms_proteinresolver
diff ProteinResolver.xml @ 1:b09b5ecc297d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
| author | galaxyp |
|---|---|
| date | Wed, 09 Aug 2017 09:26:43 -0400 |
| parents | 154998956e7a |
| children | dc9abec0379f |
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--- a/ProteinResolver.xml Wed Mar 01 12:38:04 2017 -0500 +++ b/ProteinResolver.xml Wed Aug 09 09:26:43 2017 -0400 @@ -1,7 +1,7 @@ <?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> <!--Proposed Tool Section: [Quantitation]--> -<tool id="ProteinResolver" name="ProteinResolver" version="2.1.0"> +<tool id="ProteinResolver" name="ProteinResolver" version="2.2.0"> <description>protein inference</description> <macros> <token name="@EXECUTABLE@">ProteinResolver</token> @@ -44,7 +44,12 @@ -resolver:min_length $param_resolver_min_length #end if #if $param_resolver_enzyme: - -resolver:enzyme $param_resolver_enzyme + -resolver:enzyme + #if " " in str($param_resolver_enzyme): + "$param_resolver_enzyme" + #else + $param_resolver_enzyme + #end if #end if #if $param_designer_experiment: -designer:experiment "$param_designer_experiment" @@ -53,7 +58,12 @@ -designer:file "$param_designer_file" #end if #if $param_designer_separator: - -designer:separator $param_designer_separator + -designer:separator + #if " " in str($param_designer_separator): + "$param_designer_separator" + #else + $param_designer_separator + #end if #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: @@ -63,7 +73,7 @@ </command> <inputs> <param name="param_fasta" type="data" format="fasta" optional="False" label="Input database file" help="(-fasta) "/> - <param name="param_in" type="data" format="consensusxml,idxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) "> + <param name="param_in" type="data" format="idxml,consensusxml" multiple="true" optional="True" size="30" label="Input file(s) holding experimental data" help="(-in) "> <sanitizer> <valid initial="string.printable"> <remove value="'"/>