Mercurial > repos > galaxyp > openms_psmfeatureextractor

comparison PSMFeatureExtractor.xml @ 9:047020d9012f draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 173ee0ef8aa320d2f17433d6560fff05093d127e-dirty"
author galaxyp
date Sat, 30 Jan 2021 11:38:47 +0000
parents 59736982ab7b
children 63fea23042c4
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8:59736982ab7b 9:047020d9012f
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="PSMFeatureExtractor" name="PSMFeatureExtractor" version="@TOOL_VERSION@+galaxy1" profile="20.05"> 4 <tool id="PSMFeatureExtractor" name="PSMFeatureExtractor" version="@TOOL_VERSION@+galaxy2" profile="20.05">
5 <description>Computes extra features for each input PSM.</description> 5 <description>Computes extra features for each input PSM.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">PSMFeatureExtractor</token> 7 <token name="@EXECUTABLE@">PSMFeatureExtractor</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 <import>macros_autotest.xml</import> 9 <import>macros_autotest.xml</import>
32 @EXECUTABLE@ -ini @EXECUTABLE@.ctd 32 @EXECUTABLE@ -ini @EXECUTABLE@.ctd
33 -in 33 -in
34 #if $in 34 #if $in
35 ${' '.join(["'in/%s.%s'"%(re.sub('[^\w\-_]', '_', _.element_identifier), $gxy2omsext(_.ext)) for _ in $in if _])} 35 ${' '.join(["'in/%s.%s'"%(re.sub('[^\w\-_]', '_', _.element_identifier), $gxy2omsext(_.ext)) for _ in $in if _])}
36 #else if $in_single 36 #else if $in_single
37 'in/${re.sub("[^\w\-_]", "_", $in_single.element_identifier)}.$gxy2omsext($in_single.ext)' && 37 'in/${re.sub("[^\w\-_]", "_", $in_single.element_identifier)}.$gxy2omsext($in_single.ext)'
38 #end if 38 #end if
39 -out 39 -out
40 'out/output.${out_type}' 40 'out/output.${out_type}'
41 41
42 ## Postprocessing 42 ## Postprocessing