Mercurial > repos > galaxyp > openms_psmfeatureextractor
comparison PSMFeatureExtractor.xml @ 2:54ff34feb43d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Fri, 17 May 2019 04:53:38 -0400 |
parents | 16a3498124d1 |
children | 8d4b175e06b5 |
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1:064ff75dd79c | 2:54ff34feb43d |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>PSMFeatureExtractor | 13 <command detect_errors="aggressive"><![CDATA[PSMFeatureExtractor |
14 | 14 |
15 -in | 15 -in |
16 #for token in $param_in: | 16 #for token in $param_in: |
17 $token | 17 $token |
18 #end for | 18 #end for |
48 #end if | 48 #end if |
49 #if $adv_opts.param_force: | 49 #if $adv_opts.param_force: |
50 -force | 50 -force |
51 #end if | 51 #end if |
52 #end if | 52 #end if |
53 </command> | 53 ]]></command> |
54 <inputs> | 54 <inputs> |
55 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) "> | 55 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) "> |
56 <sanitizer> | 56 <sanitizer> |
57 <valid initial="string.printable"> | 57 <valid initial="string.printable"> |
58 <remove value="'"/> | 58 <remove value="'"/> |
83 <data name="param_out" metadata_source="param_in" format="input"/> | 83 <data name="param_out" metadata_source="param_in" format="input"/> |
84 </outputs> | 84 </outputs> |
85 <help>Computes extra features for each input PSM. | 85 <help>Computes extra features for each input PSM. |
86 | 86 |
87 | 87 |
88 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_PSMFeatureExtractor.html</help> | 88 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_PSMFeatureExtractor.html</help> |
89 </tool> | 89 </tool> |