Mercurial > repos > galaxyp > openms_psmfeatureextractor

comparison PSMFeatureExtractor.xml @ 2:54ff34feb43d draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 04:53:38 -0400
parents 16a3498124d1
children 8d4b175e06b5
comparison
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1:064ff75dd79c 2:54ff34feb43d
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>PSMFeatureExtractor 13 <command detect_errors="aggressive"><![CDATA[PSMFeatureExtractor
14 14
15 -in 15 -in
16 #for token in $param_in: 16 #for token in $param_in:
17 $token 17 $token
18 #end for 18 #end for
48 #end if 48 #end if
49 #if $adv_opts.param_force: 49 #if $adv_opts.param_force:
50 -force 50 -force
51 #end if 51 #end if
52 #end if 52 #end if
53 </command> 53 ]]></command>
54 <inputs> 54 <inputs>
55 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) "> 55 <param name="param_in" type="data" format="mzid,idxml" multiple="true" optional="False" size="30" label="Input file(s)" help="(-in) ">
56 <sanitizer> 56 <sanitizer>
57 <valid initial="string.printable"> 57 <valid initial="string.printable">
58 <remove value="'"/> 58 <remove value="'"/>
83 <data name="param_out" metadata_source="param_in" format="input"/> 83 <data name="param_out" metadata_source="param_in" format="input"/>
84 </outputs> 84 </outputs>
85 <help>Computes extra features for each input PSM. 85 <help>Computes extra features for each input PSM.
86 86
87 87
88 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_PSMFeatureExtractor.html</help> 88 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_PSMFeatureExtractor.html</help>
89 </tool> 89 </tool>