Mercurial > repos > galaxyp > openms_ptpredict

diff PTPredict.xml @ 7:5d6dbdc0d585 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:00:32 -0400
parents 8cbe72a79d8b
children
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--- a/PTPredict.xml	Tue Mar 20 14:36:15 2018 -0400
+++ b/PTPredict.xml	Wed May 15 08:00:32 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>PTPredict
+  <command detect_errors="aggressive"><![CDATA[PTPredict
 
 #if $param_in:
   -in $param_in
@@ -29,7 +29,7 @@
   -force
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="idxml" optional="False" label="input file" help="(-in) "/>
     <param name="param_svm_model" type="data" format="txt" optional="False" label="svm model in libsvm format (can be produced by PTModel)" help="(-svm_model) "/>
@@ -44,5 +44,5 @@
   <help>predicts the likelihood of peptides to be proteotypic via svm_model which is trained by PTModel
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_PTPredict.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_PTPredict.html</help>
 </tool>