Mercurial > repos > galaxyp > openms_qccalculator

comparison QCCalculator.xml @ 11:044adca691a7 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:02:07 +0000
parents 8bcc0d2ad96e
children d0607dfea8fa
comparison
equal deleted inserted replaced
10:44856bd6bf27 11:044adca691a7
69 <param name="id" argument="-id" type="data" format="idxml" optional="true" label="Input idXML file containing the identifications" help="Your identifications will be exported in an easy-to-read format select idxml data sets(s)"/> 69 <param name="id" argument="-id" type="data" format="idxml" optional="true" label="Input idXML file containing the identifications" help="Your identifications will be exported in an easy-to-read format select idxml data sets(s)"/>
70 <param name="feature" argument="-feature" type="data" format="featurexml" optional="true" label="feature input file (this is relevant for most QC issues)" help=" select featurexml data sets(s)"/> 70 <param name="feature" argument="-feature" type="data" format="featurexml" optional="true" label="feature input file (this is relevant for most QC issues)" help=" select featurexml data sets(s)"/>
71 <param name="consensus" argument="-consensus" type="data" format="consensusxml" optional="true" label="consensus input file (this is only used for charge state deconvoluted output" help="Use the consensusXML output form the DeCharger) select consensusxml data sets(s)"/> 71 <param name="consensus" argument="-consensus" type="data" format="consensusxml" optional="true" label="consensus input file (this is only used for charge state deconvoluted output" help="Use the consensusXML output form the DeCharger) select consensusxml data sets(s)"/>
72 <param name="remove_duplicate_features" argument="-remove_duplicate_features" type="boolean" truevalue="true" falsevalue="false" checked="false" label="This flag should be set, if you work with a set of merged features" help=""/> 72 <param name="remove_duplicate_features" argument="-remove_duplicate_features" type="boolean" truevalue="true" falsevalue="false" checked="false" label="This flag should be set, if you work with a set of merged features" help=""/>
73 <expand macro="adv_opts_macro"> 73 <expand macro="adv_opts_macro">
74 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 74 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
75 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 75 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
76 <expand macro="list_string_san"/> 76 <expand macro="list_string_san"/>
77 </param> 77 </param>
78 </expand> 78 </expand>
79 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 79 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
80 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 80 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
81 </param> 81 </param>
82 </inputs> 82 </inputs>
83 <outputs> 83 <outputs>
84 <data name="out" label="${tool.name} on ${on_string}: out" format="qcml"/> 84 <data name="out" label="${tool.name} on ${on_string}: out" format="qcml"/>
91 <expand macro="manutest_QCCalculator"/> 91 <expand macro="manutest_QCCalculator"/>
92 </tests> 92 </tests>
93 <help><![CDATA[Calculates basic quality parameters from MS experiments and subsequent analysis data as identification or feature detection. 93 <help><![CDATA[Calculates basic quality parameters from MS experiments and subsequent analysis data as identification or feature detection.
94 94
95 95
96 For more information, visit http://www.openms.de/documentation/UTILS_QCCalculator.html]]></help> 96 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_QCCalculator.html]]></help>
97 <expand macro="references"/> 97 <expand macro="references"/>
98 </tool> 98 </tool>