Mercurial > repos > galaxyp > openms_qcexporter
comparison QCExporter.xml @ 0:15583b6b555d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
| author | galaxyp |
|---|---|
| date | Wed, 01 Mar 2017 12:27:55 -0500 |
| parents | |
| children | 702df4c5cb86 |
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| -1:000000000000 | 0:15583b6b555d |
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| 1 <?xml version='1.0' encoding='UTF-8'?> | |
| 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> | |
| 3 <!--Proposed Tool Section: [Utilities]--> | |
| 4 <tool id="QCExporter" name="QCExporter" version="2.1.0"> | |
| 5 <description>Will extract several qp from several run/sets in a tabular format.</description> | |
| 6 <macros> | |
| 7 <token name="@EXECUTABLE@">QCExporter</token> | |
| 8 <import>macros.xml</import> | |
| 9 </macros> | |
| 10 <expand macro="references"/> | |
| 11 <expand macro="stdio"/> | |
| 12 <expand macro="requirements"/> | |
| 13 <command>QCExporter | |
| 14 | |
| 15 #if $param_in: | |
| 16 -in $param_in | |
| 17 #end if | |
| 18 | |
| 19 #if $rep_param_names: | |
| 20 -names | |
| 21 #for token in $rep_param_names: | |
| 22 #if " " in str(token): | |
| 23 "$token.param_names" | |
| 24 #else | |
| 25 $token.param_names | |
| 26 #end if | |
| 27 #end for | |
| 28 #end if | |
| 29 #if $param_mapping: | |
| 30 -mapping $param_mapping | |
| 31 #end if | |
| 32 #if $param_out_csv: | |
| 33 -out_csv $param_out_csv | |
| 34 #end if | |
| 35 #if $adv_opts.adv_opts_selector=='advanced': | |
| 36 #if $adv_opts.param_force: | |
| 37 -force | |
| 38 #end if | |
| 39 #end if | |
| 40 </command> | |
| 41 <inputs> | |
| 42 <param name="param_in" type="data" format="qcml" optional="False" label="Input qcml file" help="(-in) "/> | |
| 43 <repeat name="rep_param_names" min="0" max="1" title="param_names"> | |
| 44 <param name="param_names" type="text" size="30" label="The name of the target runs or sets to be exported from" help="(-names) If empty, from all will be exported"> | |
| 45 <sanitizer> | |
| 46 <valid initial="string.printable"> | |
| 47 <remove value="'"/> | |
| 48 <remove value="""/> | |
| 49 </valid> | |
| 50 </sanitizer> | |
| 51 </param> | |
| 52 </repeat> | |
| 53 <param name="param_mapping" type="data" format="tabular" optional="False" label="The mapping of the exported table's headers to the according qp cvs" help="(-mapping) The first row is considered containing the headers as for the exported the table. The second row is considered the according qp cv accessions of the qp to be exported"/> | |
| 54 <expand macro="advanced_options"> | |
| 55 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | |
| 56 </expand> | |
| 57 </inputs> | |
| 58 <outputs> | |
| 59 <data name="param_out_csv" format="tabular"/> | |
| 60 </outputs> | |
| 61 <help>Will extract several qp from several run/sets in a tabular format. | |
| 62 | |
| 63 | |
| 64 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCExporter.html</help> | |
| 65 </tool> |