Mercurial > repos > galaxyp > openms_qcimporter

comparison QCImporter.xml @ 11:0cfaedd90c2b draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:41:59 +0000
parents ddf8a08bbd91
children d29c4c46e057
comparison
equal deleted inserted replaced
10:83f22c5c5f92 11:0cfaedd90c2b
55 <inputs> 55 <inputs>
56 <param name="in" argument="-in" type="data" format="qcml" optional="true" label="Input qcml file" help=" select qcml data sets(s)"/> 56 <param name="in" argument="-in" type="data" format="qcml" optional="true" label="Input qcml file" help=" select qcml data sets(s)"/>
57 <param name="table" argument="-table" type="data" format="csv" optional="false" label="The table containing the additional qp values in the columns" help="First row is considered containing the header. The target run or set names/ids are indicated by column &quot;raw data file&quot;, so each row after the header will contain the values of qps for that run. (csv without &quot;!) select csv data sets(s)"/> 57 <param name="table" argument="-table" type="data" format="csv" optional="false" label="The table containing the additional qp values in the columns" help="First row is considered containing the header. The target run or set names/ids are indicated by column &quot;raw data file&quot;, so each row after the header will contain the values of qps for that run. (csv without &quot;!) select csv data sets(s)"/>
58 <param name="mapping" argument="-mapping" type="data" format="csv" optional="false" label="The mapping of the table header to the according qp cvs, also in csv format" help="The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions. (csv without &quot;!) select csv data sets(s)"/> 58 <param name="mapping" argument="-mapping" type="data" format="csv" optional="false" label="The mapping of the table header to the according qp cvs, also in csv format" help="The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions. (csv without &quot;!) select csv data sets(s)"/>
59 <expand macro="adv_opts_macro"> 59 <expand macro="adv_opts_macro">
60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 60 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 61 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
62 <expand macro="list_string_san"/> 62 <expand macro="list_string_san"/>
63 </param> 63 </param>
64 </expand> 64 </expand>
65 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 65 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 66 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
67 </param> 67 </param>
68 </inputs> 68 </inputs>
69 <outputs> 69 <outputs>
70 <data name="out" label="${tool.name} on ${on_string}: out" format="qcml"/> 70 <data name="out" label="${tool.name} on ${on_string}: out" format="qcml"/>
77 <expand macro="manutest_QCImporter"/> 77 <expand macro="manutest_QCImporter"/>
78 </tests> 78 </tests>
79 <help><![CDATA[Imports tables with quality control parameters into qcml files. 79 <help><![CDATA[Imports tables with quality control parameters into qcml files.
80 80
81 81
82 For more information, visit http://www.openms.de/documentation/UTILS_QCImporter.html]]></help> 82 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_QCImporter.html]]></help>
83 <expand macro="references"/> 83 <expand macro="references"/>
84 </tool> 84 </tool>