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comparison QCImporter.xml @ 0:2edc51d55cea draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit fb85d488133bb2b5f483b52b2db0ac66038fafb8
author galaxyp
date Wed, 01 Mar 2017 13:00:01 -0500
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children 1cdf3bd28060
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-1:000000000000 0:2edc51d55cea
1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="QCImporter" name="QCImporter" version="2.1.0">
5 <description>Imports tables with quality control parameters into qcml files.</description>
6 <macros>
7 <token name="@EXECUTABLE@">QCImporter</token>
8 <import>macros.xml</import>
9 </macros>
10 <expand macro="references"/>
11 <expand macro="stdio"/>
12 <expand macro="requirements"/>
13 <command>QCImporter
14
15 #if $param_in:
16 -in $param_in
17 #end if
18 #if $param_table:
19 -table $param_table
20 #end if
21 #if $param_mapping:
22 -mapping $param_mapping
23 #end if
24 #if $param_out:
25 -out $param_out
26 #end if
27 #if $adv_opts.adv_opts_selector=='advanced':
28 #if $adv_opts.param_force:
29 -force
30 #end if
31 #end if
32 </command>
33 <inputs>
34 <param name="param_in" type="data" format="qcml" optional="True" label="Input qcml file" help="(-in) "/>
35 <param name="param_table" type="data" format="tabular" optional="False" label="The table containing the additional qp values in the columns" help="(-table) First row is considered containing the header. The target run or set names/ids are indicated by column &quot;raw data file&quot;, so each row after the header will contain the values of qps for that run. (csv without &quot;!)"/>
36 <param name="param_mapping" type="data" format="tabular" optional="False" label="The mapping of the table header to the according qp cvs, also in csv format" help="(-mapping) The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions. (csv without &quot;!)"/>
37 <expand macro="advanced_options">
38 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
39 </expand>
40 </inputs>
41 <outputs>
42 <data name="param_out" format="qcml"/>
43 </outputs>
44 <help>Imports tables with quality control parameters into qcml files.
45
46
47 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_QCImporter.html</help>
48 </tool>