Mercurial > repos > galaxyp > openms_qcimporter
view QCImporter.xml @ 8:6b6e7c5fb906 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author | galaxyp |
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date | Fri, 17 May 2019 10:09:02 -0400 |
parents | 0798f2fa6c1f |
children | ddf8a08bbd91 |
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<?xml version='1.0' encoding='UTF-8'?> <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.--> <!--Proposed Tool Section: [Utilities]--> <tool id="QCImporter" name="QCImporter" version="2.3.0"> <description>Imports tables with quality control parameters into qcml files.</description> <macros> <token name="@EXECUTABLE@">QCImporter</token> <import>macros.xml</import> </macros> <expand macro="references"/> <expand macro="stdio"/> <expand macro="requirements"/> <command detect_errors="aggressive"><![CDATA[QCImporter #if $param_in: -in $param_in #end if #if $param_table: -table $param_table #end if #if $param_mapping: -mapping $param_mapping #end if #if $param_out: -out $param_out #end if #if $adv_opts.adv_opts_selector=='advanced': #if $adv_opts.param_force: -force #end if #end if ]]></command> <inputs> <param name="param_in" type="data" format="qcml" optional="True" label="Input qcml file" help="(-in) "/> <param name="param_table" type="data" format="tabular" optional="False" label="The table containing the additional qp values in the columns" help="(-table) First row is considered containing the header. The target run or set names/ids are indicated by column "raw data file", so each row after the header will contain the values of qps for that run. (csv without "!)"/> <param name="param_mapping" type="data" format="tabular" optional="False" label="The mapping of the table header to the according qp cvs, also in csv format" help="(-mapping) The first row is considered containing the headers as in the table. The second row is considered the according qp cv accessions. (csv without "!)"/> <expand macro="advanced_options"> <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> </expand> </inputs> <outputs> <data name="param_out" format="qcml"/> </outputs> <help>Imports tables with quality control parameters into qcml files. For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_QCImporter.html</help> </tool>