Mercurial > repos > galaxyp > openms_rnadigestor

comparison RNADigestor.xml @ 2:88969677ae51 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 19:43:02 +0000
parents 3e7d3f64392b
children c951784e4967
comparison
equal deleted inserted replaced
1:f7bc536b3bf3 2:88969677ae51
45 <param name="missed_cleavages" argument="-missed_cleavages" type="integer" optional="true" min="0" value="1" label="The number of allowed missed cleavages" help=""/> 45 <param name="missed_cleavages" argument="-missed_cleavages" type="integer" optional="true" min="0" value="1" label="The number of allowed missed cleavages" help=""/>
46 <param name="min_length" argument="-min_length" type="integer" optional="true" value="3" label="Minimum length of a fragment" help=""/> 46 <param name="min_length" argument="-min_length" type="integer" optional="true" value="3" label="Minimum length of a fragment" help=""/>
47 <param name="max_length" argument="-max_length" type="integer" optional="true" value="30" label="Maximum length of a fragment" help=""/> 47 <param name="max_length" argument="-max_length" type="integer" optional="true" value="30" label="Maximum length of a fragment" help=""/>
48 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="Digestion enzyme (RNase)" help=""> 48 <param name="enzyme" argument="-enzyme" type="select" optional="false" label="Digestion enzyme (RNase)" help="">
49 <option value="RNase_T1" selected="true">RNase_T1</option> 49 <option value="RNase_T1" selected="true">RNase_T1</option>
50 <option value="RNase_MC1">RNase_MC1</option>
51 <option value="RNase_H">RNase_H</option> 50 <option value="RNase_H">RNase_H</option>
52 <option value="no cleavage">no cleavage</option> 51 <option value="no cleavage">no cleavage</option>
53 <option value="unspecific cleavage">unspecific cleavage</option> 52 <option value="unspecific cleavage">unspecific cleavage</option>
54 <option value="cusativin">cusativin</option> 53 <option value="cusativin">cusativin</option>
55 <option value="RNase_U2">RNase_U2</option> 54 <option value="RNase_U2">RNase_U2</option>
56 <option value="RNase_A">RNase_A</option> 55 <option value="RNase_A">RNase_A</option>
56 <option value="RNase_MC1">RNase_MC1</option>
57 <expand macro="list_string_san"/> 57 <expand macro="list_string_san"/>
58 </param> 58 </param>
59 <param name="unique" argument="-unique" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Report each unique sequence fragment only once" help=""/> 59 <param name="unique" argument="-unique" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Report each unique sequence fragment only once" help=""/>
60 <param name="cdna" argument="-cdna" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Input file contains cDNA sequences - replace 'T' with 'U')" help=""/> 60 <param name="cdna" argument="-cdna" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Input file contains cDNA sequences - replace 'T' with 'U')" help=""/>
61 <expand macro="adv_opts_macro"> 61 <expand macro="adv_opts_macro">
62 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 62 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
63 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 63 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
64 <expand macro="list_string_san"/> 64 <expand macro="list_string_san"/>
65 </param> 65 </param>
66 </expand> 66 </expand>
67 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 67 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
68 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 68 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
69 </param> 69 </param>
70 </inputs> 70 </inputs>
71 <outputs> 71 <outputs>
72 <data name="out" label="${tool.name} on ${on_string}: out" format="fasta"/> 72 <data name="out" label="${tool.name} on ${on_string}: out" format="fasta"/>
79 <expand macro="manutest_RNADigestor"/> 79 <expand macro="manutest_RNADigestor"/>
80 </tests> 80 </tests>
81 <help><![CDATA[Digests an RNA sequence database in-silico. 81 <help><![CDATA[Digests an RNA sequence database in-silico.
82 82
83 83
84 For more information, visit http://www.openms.de/documentation/UTILS_RNADigestor.html]]></help> 84 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_RNADigestor.html]]></help>
85 <expand macro="references"/> 85 <expand macro="references"/>
86 </tool> 86 </tool>