Mercurial > repos > galaxyp > openms_rnadigestor
comparison macros_test.xml @ 2:88969677ae51 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 19:43:02 +0000 |
parents | f7bc536b3bf3 |
children |
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1:f7bc536b3bf3 | 2:88969677ae51 |
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175 <param name="adv_opts_cond|test" value="true"/> | 175 <param name="adv_opts_cond|test" value="true"/> |
176 <param name="in" ftype="consensusxml" value="ConsensusXMLFile_1.consensusXML"/> | 176 <param name="in" ftype="consensusxml" value="ConsensusXMLFile_1.consensusXML"/> |
177 <output name="out" ftype="txt" value="MapStatistics2.txt"/> | 177 <output name="out" ftype="txt" value="MapStatistics2.txt"/> |
178 </test> | 178 </test> |
179 </xml> | 179 </xml> |
180 <xml name="manutest_MetaboliteAdductDecharger"> | |
181 <test expect_num_outputs="3"><!-- same input as used by Decharger --> | |
182 <param name="adv_opts_selector" value="advanced"/> | |
183 <param name="adv_opts_cond|test" value="true"/> | |
184 <param name="in" ftype="featurexml" value="Decharger_input.featureXML"/> | |
185 <output name="out_cm" ftype="consensusxml" value="MetaboliteAdductDecharger_cm.consensusXML" compare="sim_size"/> | |
186 <param name="OPTIONAL_OUTPUTS" value="out_fm_FLAG,outpairs_FLAG"/> | |
187 <output name="out_fm" ftype="featurexml" value="MetaboliteAdductDecharger_fm.featureXML" compare="sim_size"/> | |
188 <output name="outpairs" ftype="consensusxml" value="MetaboliteAdductDecharger_pairs.consensusXML" compare="sim_size"/> | |
189 </test> | |
190 </xml> | |
191 <xml name="manutest_MetaboliteSpectralMatcher"> | 180 <xml name="manutest_MetaboliteSpectralMatcher"> |
192 <!-- https://github.com/OpenMS/OpenMS/issues/2078 | |
193 https://github.com/OpenMS/OpenMS/pull/4468--> | |
194 <!-- same input as used in the MSGF+Adapter, should use database CHEMISTRY/MetaboliteSpectralDB.mzML --> | 181 <!-- same input as used in the MSGF+Adapter, should use database CHEMISTRY/MetaboliteSpectralDB.mzML --> |
195 <test expect_num_outputs="1"><!-- same input as used in the MSGF+Adapter, used as input and database --> | 182 <test expect_num_outputs="1"><!-- same input as used in the MSGF+Adapter, used as input and database --> |
196 <param name="adv_opts_selector" value="advanced"/> | 183 <param name="adv_opts_selector" value="advanced"/> |
197 <param name="adv_opts_cond|test" value="true"/> | 184 <param name="adv_opts_cond|test" value="true"/> |
198 <param name="in" ftype="mzml" value="spectra.mzML"/> | 185 <param name="in" ftype="mzml" value="spectra.mzML"/> |
272 <element name="part2of2" file="MzMLSplitter_2_output_part2of2.mzML" ftype="mzml"/> | 259 <element name="part2of2" file="MzMLSplitter_2_output_part2of2.mzML" ftype="mzml"/> |
273 </output_collection> | 260 </output_collection> |
274 </test> | 261 </test> |
275 </xml> | 262 </xml> |
276 <xml name="manutest_OpenSwathDIAPreScoring"> | 263 <xml name="manutest_OpenSwathDIAPreScoring"> |
277 <!-- TODO data from a test that included all the needed test files | |
278 currently unusable https://github.com/OpenMS/OpenMS/pull/4443 --> | |
279 <!-- data from a test that included all the needed test files --> | 264 <!-- data from a test that included all the needed test files --> |
280 <!-- <test>--> | 265 <test> |
281 <!-- <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/>--> | 266 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> |
282 <!-- <param name="swath_files" value="OpenSwathWorkflow_10.chrom.mzML.tmp"/> or OpenSwathAnalyzer_2_swathfile.mzML--> | 267 <param name="swath_files" value="OpenSwathAnalyzer_2_swathfile.mzML"/> |
283 <!-- <output name="out" ftype="tabular" value="OpenSwathDIAPreScoring_2.tmp"/>--> | 268 <output_collection name="output_files" count="1"> |
284 <!-- </test>--> | 269 <element name="OpenSwathAnalyzer_2_swathfile_mzML.tsv" file="OpenSwathDIAPreScoring.tsv" ftype="tabular"/> |
270 </output_collection> | |
271 </test> | |
272 | |
273 <!-- test with two inputs (actually the same file .. symlinked) --> | |
274 <test> | |
275 <param name="tr" value="OpenSwathWorkflow_1_input.TraML"/> | |
276 <param name="swath_files" value="OpenSwathDIAPreScoring_in1.mzML,OpenSwathDIAPreScoring_in2.mzML"/> | |
277 <output_collection name="output_files" count="2"> | |
278 <element name="OpenSwathDIAPreScoring_in1.tsv" file="OpenSwathDIAPreScoring.tsv" ftype="tabular"/> | |
279 <element name="OpenSwathDIAPreScoring_in1.tsv" file="OpenSwathDIAPreScoring.tsv" ftype="tabular"/> | |
280 </output_collection> | |
281 </test> | |
285 </xml> | 282 </xml> |
286 <!-- adapted from macros_discarded_auto.xml (due to prefix-output)--> | 283 <!-- adapted from macros_discarded_auto.xml (due to prefix-output)--> |
287 <xml name="manutest_OpenSwathFileSplitter"> | 284 <xml name="manutest_OpenSwathFileSplitter"> |
288 <test expect_num_outputs="3"> | 285 <test expect_num_outputs="3"> |
289 <conditional name="adv_opts_cond"> | 286 <conditional name="adv_opts_cond"> |
290 <param name="adv_opts_selector" value="advanced"/> | 287 <param name="adv_opts_selector" value="advanced"/> |
291 <param name="force" value="false"/> | 288 <param name="force" value="false"/> |
292 <param name="test" value="true"/> | 289 <param name="test" value="true"/> |
293 </conditional> | 290 </conditional> |
294 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> | 291 <param name="in" value="OpenSwathWorkflow_1_input.mzML"/> |
295 <param name="OPTIONAL_OUTPUTS" value="out_qc_FLAG,ctd_out_FLAG"/> | 292 <param name="OPTIONAL_OUTPUTS" value="out_qc_FLAG,ctd_out_FLAG"/> |
296 <output_collection name="outputDirectory" count="6"> | 293 <output_collection name="outputDirectory" count="6"> |
297 <element name="OpenSwathWorkflow_1_input_mzML_4" file="openswath_tmpfile_4.mzML" ftype="mzml"/> | 294 <element name="OpenSwathWorkflow_1_input_mzML_4" file="openswath_tmpfile_4.mzML" ftype="mzml"/> |
298 <element name="OpenSwathWorkflow_1_input_mzML_ms1" file="openswath_tmpfile_ms1.mzML" ftype="mzml"/> | 295 <element name="OpenSwathWorkflow_1_input_mzML_ms1" file="openswath_tmpfile_ms1.mzML" ftype="mzml"/> |
299 </output_collection> | 296 </output_collection> |
300 <output name="out_qc" file="OpenSwathFileSplitter_1.json" compare="sim_size" delta="5700" ftype="json"/> | 297 <output name="out_qc" file="OpenSwathFileSplitter_1.json" compare="sim_size" delta="5700" ftype="json"/> |
301 <output name="ctd_out" ftype="xml"> | 298 <output name="ctd_out" ftype="xml"> |
302 <assert_contents> | 299 <assert_contents> |
303 <is_valid_xml/> | 300 <is_valid_xml/> |
304 </assert_contents> | 301 </assert_contents> |
305 </output> | 302 </output> |
306 </test> | 303 </test> |
307 </xml> | 304 </xml> |
308 <xml name="manutest_OpenSwathRewriteToFeatureXML"> | 305 <xml name="manutest_OpenSwathRewriteToFeatureXML"> |
309 <test expect_num_outputs="1"><!-- same input as used in the MSGF+Adapter --> | 306 <test expect_num_outputs="1"><!-- same input as used in the MSGF+Adapter --> |
310 <param name="featureXML" value="OpenSwathFeatureXMLToTSV_input.featureXML"/> | 307 <param name="featureXML" value="OpenSwathFeatureXMLToTSV_input.featureXML"/> |
311 <param name="adv_opts_cond|test" value="true"/> | 308 <param name="adv_opts_cond|test" value="true"/> |
344 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> | 341 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> |
345 <param name="multiple_search_engines" value="true"/> | 342 <param name="multiple_search_engines" value="true"/> |
346 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> | 343 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> |
347 <param name="adv_opts_cond|skip_db_check" value="true"/> | 344 <param name="adv_opts_cond|skip_db_check" value="true"/> |
348 <param name="out_type" value="idxml"/> | 345 <param name="out_type" value="idxml"/> |
349 <output name="out" ftype="idxml" value="PSMFeatureExtractor.idxml" compare="sim_size" delta="100"/> | 346 <output name="out" ftype="idxml" value="PSMFeatureExtractor.idxml" compare="sim_size" delta="500"/> |
350 </test> | 347 </test> |
351 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> | 348 <test expect_num_outputs="1"><!-- using the idXML outputs of two SearchAdapters that should be compatible --> |
352 <param name="adv_opts_cond|test" value="true"/> | 349 <param name="adv_opts_cond|test" value="true"/> |
353 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> | 350 <param name="in" ftype="idxml" value="MSGFPlusAdapter_1_out.idXML,XTandemAdapter_1_out.idXML"/> |
354 <param name="multiple_search_engines" value="true"/> | 351 <param name="multiple_search_engines" value="true"/> |
355 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> | 352 <param name="adv_opts_cond|adv_opts_selector" value="advanced"/> |
356 <param name="adv_opts_cond|skip_db_check" value="true"/> | 353 <param name="adv_opts_cond|skip_db_check" value="true"/> |
357 <param name="out_type" value="mzid"/> | 354 <param name="out_type" value="mzid"/> |
358 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="100" lines_diff="4"/> | 355 <output name="out" ftype="mzid" value="PSMFeatureExtractor.mzid" compare="sim_size" delta="500"/> |
359 </test> | 356 </test> |
360 </xml> | 357 </xml> |
361 <xml name="manutest_QCCalculator"> | 358 <xml name="manutest_QCCalculator"> |
362 <test expect_num_outputs="1"><!-- took test data from another test w mzML input --> | 359 <test expect_num_outputs="1"><!-- took test data from another test w mzML input --> |
363 <param name="adv_opts_selector" value="advanced"/> | 360 <param name="adv_opts_selector" value="advanced"/> |
427 <output name="out" ftype="mzml" value="RNPxlXICFilter.mzML"/> | 424 <output name="out" ftype="mzml" value="RNPxlXICFilter.mzML"/> |
428 </test> | 425 </test> |
429 </xml> | 426 </xml> |
430 <xml name="manutest_RTEvaluation"> | 427 <xml name="manutest_RTEvaluation"> |
431 <!-- just chosen an arbitrary input and autgenerated output--> | 428 <!-- just chosen an arbitrary input and autgenerated output--> |
432 <!-- https://github.com/OpenMS/OpenMS/pull/4429 --> | |
433 <test expect_num_outputs="1"> | 429 <test expect_num_outputs="1"> |
434 <param name="adv_opts_selector" value="advanced"/> | 430 <param name="adv_opts_selector" value="advanced"/> |
435 <param name="adv_opts_cond|test" value="true"/> | 431 <param name="adv_opts_cond|test" value="true"/> |
436 <param name="in" ftype="idxml" value="PeptideIndexer_1.idXML"/> | 432 <param name="in" ftype="idxml" value="PeptideIndexer_1.idXML"/> |
437 <output name="out" ftype="csv" value="RTEvaluation.tsv"/> | 433 <output name="out" ftype="tabular" value="RTEvaluation.tsv"/> |
438 </test> | 434 </test> |
439 </xml> | 435 </xml> |
440 <xml name="manutest_SemanticValidator"> | 436 <xml name="manutest_SemanticValidator"> |
441 <test expect_num_outputs="1"><!-- just chosen an arbitrary input (same as XMLValidator) and autgenerated output--> | 437 <test expect_num_outputs="1"><!-- just chosen an arbitrary input (same as XMLValidator) and autgenerated output--> |
442 <param name="adv_opts_selector" value="advanced"/> | 438 <param name="adv_opts_selector" value="advanced"/> |
544 <output name="stdout" ftype="txt" value="XMLValidator.stdout" lines_diff="4"> | 540 <output name="stdout" ftype="txt" value="XMLValidator.stdout" lines_diff="4"> |
545 <assert_contents><has_text text="Success: the file is valid!"/></assert_contents> | 541 <assert_contents><has_text text="Success: the file is valid!"/></assert_contents> |
546 </output> | 542 </output> |
547 </test> | 543 </test> |
548 </xml> | 544 </xml> |
549 <xml name="manutest_IDMapper"/><xml name="manutest_ProteinQuantifier"/><xml name="manutest_PeakPickerIterative"/><xml name="manutest_FeatureLinkerUnlabeledQT"/><xml name="manutest_TICCalculator"/><xml name="manutest_IDFilter"/><xml name="manutest_IDPosteriorErrorProbability"/><xml name="manutest_FeatureFinderIdentification"/><xml name="manutest_XFDR"/><xml name="manutest_OpenSwathWorkflow"/><xml name="manutest_MassCalculator"/><xml name="manutest_IDFileConverter"/><xml name="manutest_MultiplexResolver"/><xml name="manutest_FeatureFinderSuperHirn"/><xml name="manutest_AssayGeneratorMetabo"/><xml name="manutest_MassTraceExtractor"/><xml name="manutest_SiriusAdapter"/><xml name="manutest_IDMerger"/><xml name="manutest_MSstatsConverter"/><xml name="manutest_FileMerger"/><xml name="manutest_Decharger"/><xml name="manutest_PTPredict"/><xml name="manutest_XTandemAdapter"/><xml name="manutest_FeatureFinderMetabo"/><xml name="manutest_CruxAdapter"/><xml name="manutest_OpenSwathConfidenceScoring"/><xml name="manutest_PrecursorIonSelector"/><xml name="manutest_ConsensusMapNormalizer"/><xml name="manutest_RTPredict"/><xml name="manutest_PercolatorAdapter"/><xml name="manutest_ProteinInference"/><xml name="manutest_OpenSwathDecoyGenerator"/><xml name="manutest_TextExporter"/><xml name="manutest_FeatureFinderCentroided"/><xml name="manutest_DecoyDatabase"/><xml name="manutest_SpectraFilterWindowMower"/><xml name="manutest_NoiseFilterGaussian"/><xml name="manutest_MaRaClusterAdapter"/><xml name="manutest_ConsensusID"/><xml name="manutest_FileFilter"/><xml name="manutest_InclusionExclusionListCreator"/><xml name="manutest_FeatureLinkerUnlabeledKD"/><xml name="manutest_NovorAdapter"/><xml name="manutest_OpenPepXL"/><xml name="manutest_SeedListGenerator"/><xml name="manutest_FalseDiscoveryRate"/><xml name="manutest_OpenPepXLLF"/><xml name="manutest_SpecLibSearcher"/><xml name="manutest_IDConflictResolver"/><xml name="manutest_MRMMapper"/><xml name="manutest_OMSSAAdapter"/><xml name="manutest_ExternalCalibration"/><xml name="manutest_PeakPickerHiRes"/><xml name="manutest_MascotAdapter"/><xml name="manutest_FeatureFinderMultiplex"/><xml name="manutest_MetaProSIP"/><xml name="manutest_FuzzyDiff"/><xml name="manutest_TargetedFileConverter"/><xml name="manutest_MapAlignerIdentification"/><xml name="manutest_IDRTCalibration"/><xml name="manutest_MRMTransitionGroupPicker"/><xml name="manutest_RTModel"/><xml name="manutest_OpenSwathAssayGenerator"/><xml name="manutest_IDSplitter"/><xml name="manutest_OpenSwathMzMLFileCacher"/><xml name="manutest_HighResPrecursorMassCorrector"/><xml name="manutest_OpenSwathChromatogramExtractor"/><xml name="manutest_OpenSwathAnalyzer"/><xml name="manutest_FeatureLinkerUnlabeled"/><xml name="manutest_CompNovoCID"/><xml name="manutest_DTAExtractor"/><xml name="manutest_FileInfo"/><xml name="manutest_MapAlignerSpectrum"/><xml name="manutest_IsobaricAnalyzer"/><xml name="manutest_LowMemPeakPickerHiRes"/><xml name="manutest_MyriMatchAdapter"/><xml name="manutest_InternalCalibration"/><xml name="manutest_TOFCalibration"/><xml name="manutest_MSGFPlusAdapter"/><xml name="manutest_PTModel"/><xml name="manutest_InspectAdapter"/><xml name="manutest_SpectraFilterSqrtMower"/><xml name="manutest_SimpleSearchEngine"/><xml name="manutest_PeakPickerWavelet"/><xml name="manutest_MapNormalizer"/><xml name="manutest_IDScoreSwitcher"/><xml name="manutest_FeatureLinkerLabeled"/><xml name="manutest_MapRTTransformer"/><xml name="manutest_RNPxlSearch"/><xml name="manutest_PrecursorMassCorrector"/><xml name="manutest_MapAlignerPoseClustering"/><xml name="manutest_MzTabExporter"/><xml name="manutest_BaselineFilter"/><xml name="manutest_FeatureFinderMRM"/><xml name="manutest_MascotAdapterOnline"/><xml name="manutest_DatabaseFilter"/><xml name="manutest_ProteinResolver"/><xml name="manutest_OpenSwathFeatureXMLToTSV"/><xml name="manutest_FidoAdapter"/><xml name="manutest_AccurateMassSearch"/><xml name="manutest_CompNovo"/><xml name="manutest_LowMemPeakPickerHiResRandomAccess"/><xml name="manutest_OpenSwathRTNormalizer"/><xml name="manutest_PeptideIndexer"/><xml name="manutest_CometAdapter"/><xml name="manutest_NoiseFilterSGolay"/><xml name="manutest_MSFraggerAdapter"/><xml name="manutest_SpectraSTSearchAdapter"/><xml name="manutest_SequestAdapter"/><xml name="manutest_FeatureFinder"/><xml name="manutest_LuciphorAdapter"/><xml name="manutest_GNPSExport"/><xml name="manutest_Epifany"/><xml name="manutest_NucleicAcidSearchEngine"/><xml name="manutest_QualityControl"/><xml name="manutest_FeatureFinderMetaboIdent"/><xml name="manutest_RNAMassCalculator"/><xml name="manutest_MapAlignerTreeGuided"/><xml name="manutest_IDMassAccuracy"/><xml name="manutest_ProteomicsLFQ"/><xml name="manutest_IDDecoyProbability"/><xml name="manutest_DigestorMotif"/></macros> | 545 <xml name="manutest_MetaboliteAdductDecharger"/><xml name="manutest_IDMapper"/><xml name="manutest_ProteinQuantifier"/><xml name="manutest_PeakPickerIterative"/><xml name="manutest_FeatureLinkerUnlabeledQT"/><xml name="manutest_TICCalculator"/><xml name="manutest_IDFilter"/><xml name="manutest_IDPosteriorErrorProbability"/><xml name="manutest_FeatureFinderIdentification"/><xml name="manutest_XFDR"/><xml name="manutest_OpenSwathWorkflow"/><xml name="manutest_MassCalculator"/><xml name="manutest_IDFileConverter"/><xml name="manutest_MultiplexResolver"/><xml name="manutest_FeatureFinderSuperHirn"/><xml name="manutest_AssayGeneratorMetabo"/><xml name="manutest_MassTraceExtractor"/><xml name="manutest_SiriusAdapter"/><xml name="manutest_IDMerger"/><xml name="manutest_MSstatsConverter"/><xml name="manutest_FileMerger"/><xml name="manutest_Decharger"/><xml name="manutest_PTPredict"/><xml name="manutest_XTandemAdapter"/><xml name="manutest_FeatureFinderMetabo"/><xml name="manutest_CruxAdapter"/><xml name="manutest_OpenSwathConfidenceScoring"/><xml name="manutest_PrecursorIonSelector"/><xml name="manutest_ConsensusMapNormalizer"/><xml name="manutest_RTPredict"/><xml name="manutest_PercolatorAdapter"/><xml name="manutest_ProteinInference"/><xml name="manutest_OpenSwathDecoyGenerator"/><xml name="manutest_TextExporter"/><xml name="manutest_FeatureFinderCentroided"/><xml name="manutest_DecoyDatabase"/><xml name="manutest_SpectraFilterWindowMower"/><xml name="manutest_NoiseFilterGaussian"/><xml name="manutest_MaRaClusterAdapter"/><xml name="manutest_ConsensusID"/><xml name="manutest_FileFilter"/><xml name="manutest_InclusionExclusionListCreator"/><xml name="manutest_FeatureLinkerUnlabeledKD"/><xml name="manutest_NovorAdapter"/><xml name="manutest_OpenPepXL"/><xml name="manutest_SeedListGenerator"/><xml name="manutest_FalseDiscoveryRate"/><xml name="manutest_OpenPepXLLF"/><xml name="manutest_SpecLibSearcher"/><xml name="manutest_IDConflictResolver"/><xml name="manutest_MRMMapper"/><xml name="manutest_OMSSAAdapter"/><xml name="manutest_ExternalCalibration"/><xml name="manutest_PeakPickerHiRes"/><xml name="manutest_MascotAdapter"/><xml name="manutest_FeatureFinderMultiplex"/><xml name="manutest_MetaProSIP"/><xml name="manutest_FuzzyDiff"/><xml name="manutest_TargetedFileConverter"/><xml name="manutest_MapAlignerIdentification"/><xml name="manutest_IDRTCalibration"/><xml name="manutest_MRMTransitionGroupPicker"/><xml name="manutest_RTModel"/><xml name="manutest_OpenSwathAssayGenerator"/><xml name="manutest_IDSplitter"/><xml name="manutest_OpenSwathMzMLFileCacher"/><xml name="manutest_HighResPrecursorMassCorrector"/><xml name="manutest_OpenSwathChromatogramExtractor"/><xml name="manutest_OpenSwathAnalyzer"/><xml name="manutest_FeatureLinkerUnlabeled"/><xml name="manutest_CompNovoCID"/><xml name="manutest_DTAExtractor"/><xml name="manutest_FileInfo"/><xml name="manutest_MapAlignerSpectrum"/><xml name="manutest_IsobaricAnalyzer"/><xml name="manutest_LowMemPeakPickerHiRes"/><xml name="manutest_MyriMatchAdapter"/><xml name="manutest_InternalCalibration"/><xml name="manutest_TOFCalibration"/><xml name="manutest_MSGFPlusAdapter"/><xml name="manutest_PTModel"/><xml name="manutest_InspectAdapter"/><xml name="manutest_SpectraFilterSqrtMower"/><xml name="manutest_SimpleSearchEngine"/><xml name="manutest_PeakPickerWavelet"/><xml name="manutest_MapNormalizer"/><xml name="manutest_IDScoreSwitcher"/><xml name="manutest_FeatureLinkerLabeled"/><xml name="manutest_MapRTTransformer"/><xml name="manutest_RNPxlSearch"/><xml name="manutest_PrecursorMassCorrector"/><xml name="manutest_MapAlignerPoseClustering"/><xml name="manutest_MzTabExporter"/><xml name="manutest_BaselineFilter"/><xml name="manutest_FeatureFinderMRM"/><xml name="manutest_MascotAdapterOnline"/><xml name="manutest_DatabaseFilter"/><xml name="manutest_ProteinResolver"/><xml name="manutest_OpenSwathFeatureXMLToTSV"/><xml name="manutest_FidoAdapter"/><xml name="manutest_AccurateMassSearch"/><xml name="manutest_CompNovo"/><xml name="manutest_LowMemPeakPickerHiResRandomAccess"/><xml name="manutest_OpenSwathRTNormalizer"/><xml name="manutest_PeptideIndexer"/><xml name="manutest_CometAdapter"/><xml name="manutest_NoiseFilterSGolay"/><xml name="manutest_MSFraggerAdapter"/><xml name="manutest_SpectraSTSearchAdapter"/><xml name="manutest_SequestAdapter"/><xml name="manutest_FeatureFinder"/><xml name="manutest_LuciphorAdapter"/><xml name="manutest_GNPSExport"/><xml name="manutest_Epifany"/><xml name="manutest_NucleicAcidSearchEngine"/><xml name="manutest_QualityControl"/><xml name="manutest_FeatureFinderMetaboIdent"/><xml name="manutest_RNAMassCalculator"/><xml name="manutest_MapAlignerTreeGuided"/><xml name="manutest_IDMassAccuracy"/><xml name="manutest_ProteomicsLFQ"/><xml name="manutest_IDDecoyProbability"/><xml name="manutest_DigestorMotif"/><xml name="manutest_DatabaseSuitability"/><xml name="manutest_StaticModification"/></macros> |