Mercurial > repos > galaxyp > openms_rnpxl

comparison RNPxl.xml @ 7:49d8333edbfb draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:03:20 -0400
parents 4f438d9d8a40
children
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6:1988e1452730 7:49d8333edbfb
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>RNPxl 13 <command detect_errors="aggressive"><![CDATA[RNPxl
14 14
15 #if $param_in_mzML: 15 #if $param_in_mzML:
16 -in_mzML $param_in_mzML 16 -in_mzML $param_in_mzML
17 #end if 17 #end if
18 #if $param_length: 18 #if $param_length:
95 #end if 95 #end if
96 #if $adv_opts.param_force: 96 #if $adv_opts.param_force:
97 -force 97 -force
98 #end if 98 #end if
99 #end if 99 #end if
100 </command> 100 ]]></command>
101 <inputs> 101 <inputs>
102 <param name="param_in_mzML" type="data" format="mzml" optional="False" label="Input file" help="(-in_mzML) "/> 102 <param name="param_in_mzML" type="data" format="mzml" optional="False" label="Input file" help="(-in_mzML) "/>
103 <param name="param_length" type="integer" value="4" label="Oligonucleotide maximum length" help="(-length) "/> 103 <param name="param_length" type="integer" value="4" label="Oligonucleotide maximum length" help="(-length) "/>
104 <param name="param_sequence" type="text" size="30" label="Sequence to restrict the generation of oligonucleotide chains" help="(-sequence) (disabled for empty sequence)"> 104 <param name="param_sequence" type="text" size="30" label="Sequence to restrict the generation of oligonucleotide chains" help="(-sequence) (disabled for empty sequence)">
105 <sanitizer> 105 <sanitizer>
165 <data name="param_out_csv" format="tabular"/> 165 <data name="param_out_csv" format="tabular"/>
166 </outputs> 166 </outputs>
167 <help>Tool for RNP cross linking experiment analysis. 167 <help>Tool for RNP cross linking experiment analysis.
168 168
169 169
170 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxl.html</help> 170 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RNPxl.html</help>
171 </tool> 171 </tool>