Mercurial > repos > galaxyp > openms_rnpxlsearch

comparison RNPxlSearch.xml @ 8:25cc460f9092 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f5fcdd54599554099fb00b1973cc91a766ad246a"
author galaxyp
date Wed, 23 Sep 2020 15:03:39 +0000
parents 7911914e96f6
children 3dc6d9795d5b
comparison
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7:7911914e96f6 8:25cc460f9092
5325 <param name="enzyme" argument="-peptide:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help=""> 5325 <param name="enzyme" argument="-peptide:enzyme" type="select" optional="false" label="The enzyme used for peptide digestion" help="">
5326 <option value="TrypChymo">TrypChymo</option> 5326 <option value="TrypChymo">TrypChymo</option>
5327 <option value="Trypsin/P">Trypsin/P</option> 5327 <option value="Trypsin/P">Trypsin/P</option>
5328 <option value="V8-DE">V8-DE</option> 5328 <option value="V8-DE">V8-DE</option>
5329 <option value="Trypsin" selected="true">Trypsin</option> 5329 <option value="Trypsin" selected="true">Trypsin</option>
5330 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
5331 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
5332 <option value="2-iodobenzoate">2-iodobenzoate</option>
5333 <option value="iodosobenzoate">iodosobenzoate</option>
5334 <option value="staphylococcal protease/D">staphylococcal protease/D</option>
5335 <option value="Lys-C/P">Lys-C/P</option>
5336 <option value="PepsinA">PepsinA</option>
5337 <option value="Arg-C/P">Arg-C/P</option>
5338 <option value="Asp-N">Asp-N</option>
5339 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
5340 <option value="Glu-C+P">Glu-C+P</option> 5330 <option value="Glu-C+P">Glu-C+P</option>
5341 <option value="PepsinA + P">PepsinA + P</option> 5331 <option value="PepsinA + P">PepsinA + P</option>
5342 <option value="cyanogen-bromide">cyanogen-bromide</option> 5332 <option value="cyanogen-bromide">cyanogen-bromide</option>
5343 <option value="Clostripain/P">Clostripain/P</option> 5333 <option value="Clostripain/P">Clostripain/P</option>
5344 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option> 5334 <option value="elastase-trypsin-chymotrypsin">elastase-trypsin-chymotrypsin</option>
5345 <option value="no cleavage">no cleavage</option> 5335 <option value="V8-E">V8-E</option>
5346 <option value="unspecific cleavage">unspecific cleavage</option> 5336 <option value="leukocyte elastase">leukocyte elastase</option>
5347 <option value="Lys-C">Lys-C</option> 5337 <option value="proline endopeptidase">proline endopeptidase</option>
5348 <option value="Lys-N">Lys-N</option> 5338 <option value="glutamyl endopeptidase">glutamyl endopeptidase</option>
5349 <option value="Asp-N/B">Asp-N/B</option>
5350 <option value="Asp-N_ambic">Asp-N_ambic</option>
5351 <option value="Chymotrypsin">Chymotrypsin</option> 5339 <option value="Chymotrypsin">Chymotrypsin</option>
5352 <option value="Chymotrypsin/P">Chymotrypsin/P</option> 5340 <option value="Chymotrypsin/P">Chymotrypsin/P</option>
5353 <option value="CNBr">CNBr</option> 5341 <option value="CNBr">CNBr</option>
5342 <option value="no cleavage">no cleavage</option>
5343 <option value="unspecific cleavage">unspecific cleavage</option>
5354 <option value="Formic_acid">Formic_acid</option> 5344 <option value="Formic_acid">Formic_acid</option>
5345 <option value="Lys-C">Lys-C</option>
5346 <option value="Lys-N">Lys-N</option>
5347 <option value="Asp-N">Asp-N</option>
5348 <option value="Asp-N/B">Asp-N/B</option>
5349 <option value="Asp-N_ambic">Asp-N_ambic</option>
5350 <option value="Lys-C/P">Lys-C/P</option>
5351 <option value="PepsinA">PepsinA</option>
5352 <option value="Alpha-lytic protease">Alpha-lytic protease</option>
5353 <option value="2-iodobenzoate">2-iodobenzoate</option>
5354 <option value="iodosobenzoate">iodosobenzoate</option>
5355 <option value="staphylococcal protease/D">staphylococcal protease/D</option>
5356 <option value="proline-endopeptidase/HKR">proline-endopeptidase/HKR</option>
5355 <option value="Arg-C">Arg-C</option> 5357 <option value="Arg-C">Arg-C</option>
5356 <option value="V8-E">V8-E</option> 5358 <option value="Arg-C/P">Arg-C/P</option>
5357 <option value="leukocyte elastase">leukocyte elastase</option>
5358 <option value="proline endopeptidase">proline endopeptidase</option>
5359 <expand macro="list_string_san"/> 5359 <expand macro="list_string_san"/>
5360 </param> 5360 </param>
5361 </section> 5361 </section>
5362 <section name="report" title="Reporting Options" help="" expanded="false"> 5362 <section name="report" title="Reporting Options" help="" expanded="false">
5363 <param name="top_hits" argument="-report:top_hits" type="integer" optional="true" value="1" label="Maximum number of top scoring hits per spectrum that are reported" help=""/> 5363 <param name="top_hits" argument="-report:top_hits" type="integer" optional="true" value="1" label="Maximum number of top scoring hits per spectrum that are reported" help=""/>