Mercurial > repos > galaxyp > openms_rnpxlxicfilter
comparison RNPxlXICFilter.xml @ 7:397b489a4f8d draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5-dirty
author | galaxyp |
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date | Fri, 17 May 2019 10:22:24 -0400 |
parents | 8128af6d94bb |
children | 8a2e37503e3e |
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6:1ee2d03c8445 | 7:397b489a4f8d |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>RNPxlXICFilter | 13 <command detect_errors="aggressive"><![CDATA[RNPxlXICFilter |
14 | 14 |
15 #if $param_control: | 15 #if $param_control: |
16 -control $param_control | 16 -control $param_control |
17 #end if | 17 #end if |
18 #if $param_treatment: | 18 #if $param_treatment: |
33 #if $adv_opts.adv_opts_selector=='advanced': | 33 #if $adv_opts.adv_opts_selector=='advanced': |
34 #if $adv_opts.param_force: | 34 #if $adv_opts.param_force: |
35 -force | 35 -force |
36 #end if | 36 #end if |
37 #end if | 37 #end if |
38 </command> | 38 ]]></command> |
39 <inputs> | 39 <inputs> |
40 <param name="param_control" type="data" format="mzml" optional="False" label="input mzML file" help="(-control) "/> | 40 <param name="param_control" type="data" format="mzml" optional="False" label="input mzML file" help="(-control) "/> |
41 <param name="param_treatment" type="data" format="mzml" optional="False" label="input mzML file" help="(-treatment) "/> | 41 <param name="param_treatment" type="data" format="mzml" optional="False" label="input mzML file" help="(-treatment) "/> |
42 <param name="param_fold_change" type="float" value="2.0" label="fold change between XICs" help="(-fold_change) "/> | 42 <param name="param_fold_change" type="float" value="2.0" label="fold change between XICs" help="(-fold_change) "/> |
43 <param name="param_rt_tol" type="float" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help="(-rt_tol) "/> | 43 <param name="param_rt_tol" type="float" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help="(-rt_tol) "/> |
50 <data name="param_out" format="mzml"/> | 50 <data name="param_out" format="mzml"/> |
51 </outputs> | 51 </outputs> |
52 <help>Remove MS2 spectra from treatment based on the fold change between control and treatment. | 52 <help>Remove MS2 spectra from treatment based on the fold change between control and treatment. |
53 | 53 |
54 | 54 |
55 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_RNPxlXICFilter.html</help> | 55 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_RNPxlXICFilter.html</help> |
56 </tool> | 56 </tool> |