Mercurial > repos > galaxyp > openms_rnpxlxicfilter
comparison RNPxlXICFilter.xml @ 10:c2827f0ca312 draft
"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author | galaxyp |
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date | Tue, 13 Oct 2020 20:13:28 +0000 |
parents | 8a2e37503e3e |
children | 81d5ef72ef9d |
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9:e7a97a131b5f | 10:c2827f0ca312 |
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49 <param name="treatment" argument="-treatment" type="data" format="mzml" optional="false" label="input mzML file" help=" select mzml data sets(s)"/> | 49 <param name="treatment" argument="-treatment" type="data" format="mzml" optional="false" label="input mzML file" help=" select mzml data sets(s)"/> |
50 <param name="fold_change" argument="-fold_change" type="float" optional="true" value="2.0" label="fold change between XICs" help=""/> | 50 <param name="fold_change" argument="-fold_change" type="float" optional="true" value="2.0" label="fold change between XICs" help=""/> |
51 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help=""/> | 51 <param name="rt_tol" argument="-rt_tol" type="float" optional="true" value="20.0" label="RT tolerance in [s] for finding max peak (whole RT range around RT middle)" help=""/> |
52 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" value="10.0" label="m/z tolerance in [ppm] for finding a peak" help=""/> | 52 <param name="mz_tol" argument="-mz_tol" type="float" optional="true" value="10.0" label="m/z tolerance in [ppm] for finding a peak" help=""/> |
53 <expand macro="adv_opts_macro"> | 53 <expand macro="adv_opts_macro"> |
54 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> | 54 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/> |
55 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> | 55 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> |
56 <expand macro="list_string_san"/> | 56 <expand macro="list_string_san"/> |
57 </param> | 57 </param> |
58 </expand> | 58 </expand> |
59 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> | 59 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs"> |
60 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> | 60 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> |
61 </param> | 61 </param> |
62 </inputs> | 62 </inputs> |
63 <outputs> | 63 <outputs> |
64 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> | 64 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> |
71 <expand macro="manutest_RNPxlXICFilter"/> | 71 <expand macro="manutest_RNPxlXICFilter"/> |
72 </tests> | 72 </tests> |
73 <help><![CDATA[Remove MS2 spectra from treatment based on the fold change between control and treatment. | 73 <help><![CDATA[Remove MS2 spectra from treatment based on the fold change between control and treatment. |
74 | 74 |
75 | 75 |
76 For more information, visit http://www.openms.de/documentation/UTILS_RNPxlXICFilter.html]]></help> | 76 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_RNPxlXICFilter.html]]></help> |
77 <expand macro="references"/> | 77 <expand macro="references"/> |
78 </tool> | 78 </tool> |