Mercurial > repos > galaxyp > openms_rtpredict

diff RTPredict.xml @ 7:3166bc58c62c draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Fri, 17 May 2019 05:03:43 -0400
parents 1eb2400e3f61
children
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--- a/RTPredict.xml	Tue Mar 20 15:19:42 2018 -0400
+++ b/RTPredict.xml	Fri May 17 05:03:43 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>RTPredict
+  <command detect_errors="aggressive"><![CDATA[RTPredict
 
 #if $param_in_id:
   -in_id $param_in_id
@@ -53,7 +53,7 @@
   -out_id:rewrite_peptideidentification_rtmz
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in_id" type="data" format="idxml" optional="True" label="Peptides with precursor information" help="(-in_id) "/>
     <param name="param_in_text" type="data" format="txt" optional="True" label="Peptides as text-based file" help="(-in_text) "/>
@@ -76,5 +76,5 @@
   <help>Predicts retention times for peptides using a model trained by RTModel.
 
 
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_RTPredict.html</help>
+For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_RTPredict.html</help>
 </tool>