Mercurial > repos > galaxyp > openms_seedlistgenerator

comparison SeedListGenerator.xml @ 5:f840d8e8099a draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:39:37 +0000
parents bff2e0548994
children f3c72f54b9eb
comparison
equal deleted inserted replaced
4:47ce7a087ec1 5:f840d8e8099a
42 </configfiles> 42 </configfiles>
43 <inputs> 43 <inputs>
44 <param name="in" argument="-in" type="data" format="featurexml,idxml,mzml" optional="false" label="Input file (see below for details)" help=" select featurexml,idxml,mzml data sets(s)"/> 44 <param name="in" argument="-in" type="data" format="featurexml,idxml,mzml" optional="false" label="Input file (see below for details)" help=" select featurexml,idxml,mzml data sets(s)"/>
45 <param name="use_peptide_mass" argument="-use_peptide_mass" type="boolean" truevalue="true" falsevalue="false" checked="false" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help=""/> 45 <param name="use_peptide_mass" argument="-use_peptide_mass" type="boolean" truevalue="true" falsevalue="false" checked="false" label="[idXML input only] Use the monoisotopic mass of the best peptide hit for the m/z position (default: use precursor m/z)" help=""/>
46 <expand macro="adv_opts_macro"> 46 <expand macro="adv_opts_macro">
47 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 47 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
48 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 48 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
49 <expand macro="list_string_san"/> 49 <expand macro="list_string_san"/>
50 </param> 50 </param>
51 </expand> 51 </expand>
52 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 52 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
53 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 53 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
54 </param> 54 </param>
55 </inputs> 55 </inputs>
56 <outputs> 56 <outputs>
57 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/> 57 <data name="out" label="${tool.name} on ${on_string}: out" format="featurexml"/>
64 <expand macro="manutest_SeedListGenerator"/> 64 <expand macro="manutest_SeedListGenerator"/>
65 </tests> 65 </tests>
66 <help><![CDATA[Generates seed lists for feature detection. 66 <help><![CDATA[Generates seed lists for feature detection.
67 67
68 68
69 For more information, visit http://www.openms.de/documentation/TOPP_SeedListGenerator.html]]></help> 69 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_SeedListGenerator.html]]></help>
70 <expand macro="references"/> 70 <expand macro="references"/>
71 </tool> 71 </tool>