Mercurial > repos > galaxyp > openms_semanticvalidator

comparison SemanticValidator.xml @ 1:a2f42576d8d6 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 9a14ed1f2d3c9abdfb080251b3419dd9e0c52a14
author galaxyp
date Wed, 09 Aug 2017 09:40:39 -0400
parents f5dfeed76b4c
children ae772e47d635
comparison
equal deleted inserted replaced
0:f5dfeed76b4c 1:a2f42576d8d6
1 <?xml version='1.0' encoding='UTF-8'?> 1 <?xml version='1.0' encoding='UTF-8'?>
2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.--> 2 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
3 <!--Proposed Tool Section: [Utilities]--> 3 <!--Proposed Tool Section: [Utilities]-->
4 <tool id="SemanticValidator" name="SemanticValidator" version="2.1.0"> 4 <tool id="SemanticValidator" name="SemanticValidator" version="2.2.0.1">
5 <description>SemanticValidator for semantically validating certain XML files.</description> 5 <description>SemanticValidator for semantically validating certain XML files.</description>
6 <macros> 6 <macros>
7 <token name="@EXECUTABLE@">SemanticValidator</token> 7 <token name="@EXECUTABLE@">SemanticValidator</token>
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
28 #end if 28 #end if
29 #end if 29 #end if
30 &gt; $param_stdout 30 &gt; $param_stdout
31 </command> 31 </command>
32 <inputs> 32 <inputs>
33 <param name="param_in" type="data" format="mzid,traml,mzml" optional="False" label="Input file (any xml file)" help="(-in) "/> 33 <param name="param_in" type="data" format="analysisXML,mzml,traml,mzid,mzData,xml" optional="False" label="Input file (any xml file)" help="(-in) "/>
34 <param name="param_mapping_file" type="data" format="" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/> 34 <param name="param_mapping_file" type="data" format="xml" optional="False" label="Mapping file which is used to semantically validate the given XML file against this mapping file (see 'share/OpenMS/MAPPING' for templates)" help="(-mapping_file) "/>
35 <param name="param_cv" type="data" format="" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) "> 35 <param name="param_cv" type="data" format="obo" multiple="true" optional="True" size="30" label="Controlled Vocabulary files containg the CV terms (if left empty, a set of default files are used)" help="(-cv) ">
36 <sanitizer> 36 <sanitizer>
37 <valid initial="string.printable"> 37 <valid initial="string.printable">
38 <remove value="'"/> 38 <remove value="'"/>
39 <remove value="&quot;"/> 39 <remove value="&quot;"/>
40 </valid> 40 </valid>
43 <expand macro="advanced_options"> 43 <expand macro="advanced_options">
44 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> 44 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
45 </expand> 45 </expand>
46 </inputs> 46 </inputs>
47 <outputs> 47 <outputs>
48 <data name="param_stdout" format="text" label="Output from stdout"/> 48 <data name="param_stdout" format="txt" label="Output from stdout"/>
49 </outputs> 49 </outputs>
50 <help>SemanticValidator for semantically validating certain XML files. 50 <help>SemanticValidator for semantically validating certain XML files.
51 51
52 52
53 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SemanticValidator.html</help> 53 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SemanticValidator.html</help>