--- a/SequenceCoverageCalculator.xml	Fri Nov 06 20:20:33 2020 +0000
+++ b/SequenceCoverageCalculator.xml	Thu Dec 01 19:22:41 2022 +0000
@@ -1,13 +1,11 @@
 <?xml version='1.0' encoding='UTF-8'?>
 <!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTDConverter.-->
 <!--Proposed Tool Section: [Utilities]-->
-<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="@TOOL_VERSION@+galaxy@GALAXY_VERSION@" profile="20.05">
+<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.05">
   <description>Prints information about idXML files.</description>
   <macros>
     <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
     <import>macros.xml</import>
-    <import>macros_autotest.xml</import>
-    <import>macros_test.xml</import>
   </macros>
   <expand macro="requirements"/>
   <expand macro="stdio"/>
@@ -45,12 +43,12 @@
     <configfile name="hardcoded_json"><![CDATA[{"log": "log.txt", "threads": "\${GALAXY_SLOTS:-1}", "no_progress": true}]]></configfile>
   </configfiles>
   <inputs>
-    <param name="in_database" argument="-in_database" type="data" format="fasta" optional="false" label="input file containing the database in FASTA format" help=" select fasta data sets(s)"/>
-    <param name="in_peptides" argument="-in_peptides" type="data" format="idxml" optional="false" label="input file containing the identified peptides" help=" select idxml data sets(s)"/>
+    <param argument="-in_database" type="data" format="fasta" optional="false" label="input file containing the database in FASTA format" help=" select fasta data sets(s)"/>
+    <param argument="-in_peptides" type="data" format="idxml" optional="false" label="input file containing the identified peptides" help=" select idxml data sets(s)"/>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
-      <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
-        <expand macro="list_string_san"/>
+      <param argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
+      <param argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
+        <expand macro="list_string_san" name="test"/>
       </param>
     </expand>
     <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
@@ -63,13 +61,16 @@
       <filter>OPTIONAL_OUTPUTS is not None and "ctd_out_FLAG" in OPTIONAL_OUTPUTS</filter>
     </data>
   </outputs>
-  <tests>
-    <expand macro="autotest_SequenceCoverageCalculator"/>
-    <expand macro="manutest_SequenceCoverageCalculator"/>
-  </tests>
+  <tests><test expect_num_outputs="1"><!-- took test data from another tool that also takes idXML and fasta as input -->
+    <param name="adv_opts|test" value="true"/>
+    <param name="in_database" value="PeptideIndexer_1.fasta" ftype="fasta"/>
+    <param name="in_peptides" value="SequenceCoverageCalculator_1.idXML" ftype="idxml"/>
+    <output name="out" value="SequenceCoverageCalculator.txt" ftype="txt" compare="sim_size"/>
+  </test>
+</tests>
   <help><![CDATA[Prints information about idXML files.
 
 
-For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_SequenceCoverageCalculator.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.8.0/html/UTILS_SequenceCoverageCalculator.html]]></help>
   <expand macro="references"/>
 </tool>