Mercurial > repos > galaxyp > openms_sequencecoveragecalculator

diff SequenceCoverageCalculator.xml @ 11:7cfb36b97c87 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:12:40 +0000
parents 01e5bd3ad317
children 3fe59b1a1370
line wrap: on
line diff
--- a/SequenceCoverageCalculator.xml	Thu Sep 24 10:03:05 2020 +0000
+++ b/SequenceCoverageCalculator.xml	Tue Oct 13 20:12:40 2020 +0000
@@ -48,12 +48,12 @@
     <param name="in_database" argument="-in_database" type="data" format="fasta" optional="false" label="input file containing the database in FASTA format" help=" select fasta data sets(s)"/>
     <param name="in_peptides" argument="-in_peptides" type="data" format="idxml" optional="false" label="input file containing the identified peptides" help=" select idxml data sets(s)"/>
     <expand macro="adv_opts_macro">
-      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/>
+      <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
       <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
         <expand macro="list_string_san"/>
       </param>
     </expand>
-    <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true">
+    <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
       <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
     </param>
   </inputs>
@@ -70,6 +70,6 @@
   <help><![CDATA[Prints information about idXML files.
 
 
-For more information, visit http://www.openms.de/documentation/UTILS_SequenceCoverageCalculator.html]]></help>
+For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_SequenceCoverageCalculator.html]]></help>
   <expand macro="references"/>
 </tool>