--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SequenceCoverageCalculator.xml	Wed Mar 01 12:42:09 2017 -0500
@@ -0,0 +1,44 @@
+<?xml version='1.0' encoding='UTF-8'?>
+<!--This is a configuration file for the integration of a tools into Galaxy (https://galaxyproject.org/). This file was automatically generated using CTD2Galaxy.-->
+<!--Proposed Tool Section: [Utilities]-->
+<tool id="SequenceCoverageCalculator" name="SequenceCoverageCalculator" version="2.1.0">
+  <description>Prints information about idXML files.</description>
+  <macros>
+    <token name="@EXECUTABLE@">SequenceCoverageCalculator</token>
+    <import>macros.xml</import>
+  </macros>
+  <expand macro="references"/>
+  <expand macro="stdio"/>
+  <expand macro="requirements"/>
+  <command>SequenceCoverageCalculator
+
+#if $param_in_database:
+  -in_database $param_in_database
+#end if
+#if $param_in_peptides:
+  -in_peptides $param_in_peptides
+#end if
+#if $param_out:
+  -out $param_out
+#end if
+#if $adv_opts.adv_opts_selector=='advanced':
+    #if $adv_opts.param_force:
+  -force
+#end if
+#end if
+</command>
+  <inputs>
+    <param name="param_in_database" type="data" format="fasta" optional="False" label="input file containing the database in FASTA format" help="(-in_database) "/>
+    <param name="param_in_peptides" type="data" format="idxml" optional="False" label="input file containing the identified peptides" help="(-in_peptides) "/>
+    <expand macro="advanced_options">
+      <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/>
+    </expand>
+  </inputs>
+  <outputs>
+    <data name="param_out" format="txt"/>
+  </outputs>
+  <help>Prints information about idXML files.
+
+
+For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SequenceCoverageCalculator.html</help>
+</tool>