Mercurial > repos > galaxyp > openms_simplesearchengine

diff SimpleSearchEngine.xml @ 7:3cec90deb64b draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:01:25 -0400
parents 242ba7640825
children e42e8b553f7d
line wrap: on
line diff
--- a/SimpleSearchEngine.xml	Tue Mar 20 14:36:49 2018 -0400
+++ b/SimpleSearchEngine.xml	Wed May 15 08:01:25 2019 -0400
@@ -10,7 +10,7 @@
   <expand macro="references"/>
   <expand macro="stdio"/>
   <expand macro="requirements"/>
-  <command>SimpleSearchEngine
+  <command detect_errors="aggressive"><![CDATA[SimpleSearchEngine
 
 #if $param_in:
   -in $param_in
@@ -110,7 +110,7 @@
   -report:top_hits $adv_opts.param_report_top_hits
 #end if
 #end if
-</command>
+]]></command>
   <inputs>
     <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/>
     <param name="param_database" type="data" format="fasta" optional="False" label="input file" help="(-database) "/>
@@ -5242,7 +5242,5 @@
     <data name="param_out" format="idxml"/>
   </outputs>
   <help>Annotates MS/MS spectra using SimpleSearchEngine.
-
-
-For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SimpleSearchEngine.html</help>
+  </help>
 </tool>