Mercurial > repos > galaxyp > openms_siriusadapter

comparison SiriusAdapter.xml @ 2:8a3a17bbcb63 draft

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planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author galaxyp
date Wed, 15 May 2019 08:07:01 -0400
parents 7c78a40e68d7
children 01731de4b735
comparison
equal deleted inserted replaced
1:5f87757577cc 2:8a3a17bbcb63
8 <import>macros.xml</import> 8 <import>macros.xml</import>
9 </macros> 9 </macros>
10 <expand macro="references"/> 10 <expand macro="references"/>
11 <expand macro="stdio"/> 11 <expand macro="stdio"/>
12 <expand macro="requirements"/> 12 <expand macro="requirements"/>
13 <command>SiriusAdapter 13 <command detect_errors="aggressive"><![CDATA[SiriusAdapter
14 14
15 #if $param_in: 15 #if $param_in:
16 -in $param_in 16 -in $param_in
17 #end if 17 #end if
18 #if $param_out_sirius: 18 #if $param_out_sirius:
72 #if $adv_opts.adv_opts_selector=='advanced': 72 #if $adv_opts.adv_opts_selector=='advanced':
73 #if $adv_opts.param_force: 73 #if $adv_opts.param_force:
74 -force 74 -force
75 #end if 75 #end if
76 #end if 76 #end if
77 </command> 77 ]]></command>
78 <inputs> 78 <inputs>
79 <param name="param_in" type="data" format="mzml" optional="False" label="MzML Input file" help="(-in) "/> 79 <param name="param_in" type="data" format="mzml" optional="False" label="MzML Input file" help="(-in) "/>
80 <param name="param_profile" display="radio" type="select" optional="False" value="qtof" label="Specify the used analysis profile" help="(-profile) "> 80 <param name="param_profile" display="radio" type="select" optional="False" value="qtof" label="Specify the used analysis profile" help="(-profile) ">
81 <option value="qtof" selected="true">qtof</option> 81 <option value="qtof" selected="true">qtof</option>
82 <option value="orbitrap">orbitrap</option> 82 <option value="orbitrap">orbitrap</option>
131 <data name="param_out_fingerid" format="tabular"/> 131 <data name="param_out_fingerid" format="tabular"/>
132 </outputs> 132 </outputs>
133 <help>Tool for metabolite identification using single and tandem mass spectrometry 133 <help>Tool for metabolite identification using single and tandem mass spectrometry
134 134
135 135
136 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/UTILS_SiriusAdapter.html</help> 136 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/UTILS_SiriusAdapter.html</help>
137 </tool> 137 </tool>