Mercurial > repos > galaxyp > openms_speclibcreator

comparison SpecLibCreator.xml @ 11:5d837ca93d0e draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:20:18 +0000
parents 70105532a580
children da1fa8ce2d96
comparison
equal deleted inserted replaced
10:15f9084434c0 11:5d837ca93d0e
50 <expand macro="list_string_san"/> 50 <expand macro="list_string_san"/>
51 </param> 51 </param>
52 <param name="itemenclosed" argument="-itemenclosed" type="boolean" truevalue="true" falsevalue="false" checked="false" label="'true' or 'false' if true every item is enclosed" help="e.g. '$peptide$,$run$"/> 52 <param name="itemenclosed" argument="-itemenclosed" type="boolean" truevalue="true" falsevalue="false" checked="false" label="'true' or 'false' if true every item is enclosed" help="e.g. '$peptide$,$run$"/>
53 <param name="spec" argument="-spec" type="data" format="mzdata,mzxml" optional="false" label="spectra" help=" select mzdata,mzxml data sets(s)"/> 53 <param name="spec" argument="-spec" type="data" format="mzdata,mzxml" optional="false" label="spectra" help=" select mzdata,mzxml data sets(s)"/>
54 <expand macro="adv_opts_macro"> 54 <expand macro="adv_opts_macro">
55 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 55 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
56 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 56 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
57 <expand macro="list_string_san"/> 57 <expand macro="list_string_san"/>
58 </param> 58 </param>
59 </expand> 59 </expand>
60 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 60 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
61 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 61 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
62 </param> 62 </param>
63 </inputs> 63 </inputs>
64 <outputs> 64 <outputs>
65 <data name="out" label="${tool.name} on ${on_string}: out" format="msp"/> 65 <data name="out" label="${tool.name} on ${on_string}: out" format="msp"/>
72 <expand macro="manutest_SpecLibCreator"/> 72 <expand macro="manutest_SpecLibCreator"/>
73 </tests> 73 </tests>
74 <help><![CDATA[Creates an MSP formatted spectral library. 74 <help><![CDATA[Creates an MSP formatted spectral library.
75 75
76 76
77 For more information, visit http://www.openms.de/documentation/UTILS_SpecLibCreator.html]]></help> 77 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/UTILS_SpecLibCreator.html]]></help>
78 <expand macro="references"/> 78 <expand macro="references"/>
79 </tool> 79 </tool>