Mercurial > repos > galaxyp > openms_spectrafilterbernnorm

comparison SpectraFilterBernNorm.xml @ 11:ac9a76f39deb draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit 55a2aeba8bfd8a6910630721de9857dcdfe05d3c"
author galaxyp
date Tue, 13 Oct 2020 20:17:03 +0000
parents ec9c04b05fa2
children 1a03426f3c8d
comparison
equal deleted inserted replaced
10:7250e2511a8e 11:ac9a76f39deb
46 <param name="C1" argument="-algorithm:C1" type="float" optional="true" value="28.0" label="C1 value of the normalization" help=""/> 46 <param name="C1" argument="-algorithm:C1" type="float" optional="true" value="28.0" label="C1 value of the normalization" help=""/>
47 <param name="C2" argument="-algorithm:C2" type="float" optional="true" value="400.0" label="C2 value of the normalization" help=""/> 47 <param name="C2" argument="-algorithm:C2" type="float" optional="true" value="400.0" label="C2 value of the normalization" help=""/>
48 <param name="threshold" argument="-algorithm:threshold" type="float" optional="true" value="0.1" label="Threshold of the Bern et al. normalization" help=""/> 48 <param name="threshold" argument="-algorithm:threshold" type="float" optional="true" value="0.1" label="Threshold of the Bern et al. normalization" help=""/>
49 </section> 49 </section>
50 <expand macro="adv_opts_macro"> 50 <expand macro="adv_opts_macro">
51 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overwrite tool specific checks" help=""/> 51 <param name="force" argument="-force" type="boolean" truevalue="true" falsevalue="false" checked="false" label="Overrides tool-specific checks" help=""/>
52 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help=""> 52 <param name="test" argument="-test" type="hidden" optional="true" value="False" label="Enables the test mode (needed for internal use only)" help="">
53 <expand macro="list_string_san"/> 53 <expand macro="list_string_san"/>
54 </param> 54 </param>
55 </expand> 55 </expand>
56 <param name="OPTIONAL_OUTPUTS" type="select" multiple="true" label="Optional outputs" optional="true"> 56 <param name="OPTIONAL_OUTPUTS" type="select" optional="true" multiple="true" label="Optional outputs">
57 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option> 57 <option value="ctd_out_FLAG">Output used ctd (ini) configuration file</option>
58 </param> 58 </param>
59 </inputs> 59 </inputs>
60 <outputs> 60 <outputs>
61 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/> 61 <data name="out" label="${tool.name} on ${on_string}: out" format="mzml"/>
68 <expand macro="manutest_SpectraFilterBernNorm"/> 68 <expand macro="manutest_SpectraFilterBernNorm"/>
69 </tests> 69 </tests>
70 <help><![CDATA[Applies thresholdfilter to peak spectra. 70 <help><![CDATA[Applies thresholdfilter to peak spectra.
71 71
72 72
73 For more information, visit http://www.openms.de/documentation/TOPP_SpectraFilterBernNorm.html]]></help> 73 For more information, visit http://www.openms.de/doxygen/release/2.6.0/html/TOPP_SpectraFilterBernNorm.html]]></help>
74 <expand macro="references"/> 74 <expand macro="references"/>
75 </tool> 75 </tool>