Mercurial > repos > galaxyp > openms_spectrafilternlargest
comparison SpectraFilterNLargest.xml @ 7:86ca15f8a000 draft
planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/master/tools/openms commit f608f41d45664d04d3124c6ebc791bf8a566b3c5
author | galaxyp |
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date | Wed, 15 May 2019 07:55:10 -0400 |
parents | 09edb33c735f |
children | 05a7ffa3f655 |
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6:a49171b574ea | 7:86ca15f8a000 |
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8 <import>macros.xml</import> | 8 <import>macros.xml</import> |
9 </macros> | 9 </macros> |
10 <expand macro="references"/> | 10 <expand macro="references"/> |
11 <expand macro="stdio"/> | 11 <expand macro="stdio"/> |
12 <expand macro="requirements"/> | 12 <expand macro="requirements"/> |
13 <command>SpectraFilterNLargest | 13 <command detect_errors="aggressive"><![CDATA[SpectraFilterNLargest |
14 | 14 |
15 #if $param_in: | 15 #if $param_in: |
16 -in $param_in | 16 -in $param_in |
17 #end if | 17 #end if |
18 #if $param_out: | 18 #if $param_out: |
24 #if $adv_opts.adv_opts_selector=='advanced': | 24 #if $adv_opts.adv_opts_selector=='advanced': |
25 #if $adv_opts.param_force: | 25 #if $adv_opts.param_force: |
26 -force | 26 -force |
27 #end if | 27 #end if |
28 #end if | 28 #end if |
29 </command> | 29 ]]></command> |
30 <inputs> | 30 <inputs> |
31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> | 31 <param name="param_in" type="data" format="mzml" optional="False" label="input file" help="(-in) "/> |
32 <param name="param_algorithm_n" type="integer" value="200" label="The number of peaks to keep" help="(-n) "/> | 32 <param name="param_algorithm_n" type="integer" value="200" label="The number of peaks to keep" help="(-n) "/> |
33 <expand macro="advanced_options"> | 33 <expand macro="advanced_options"> |
34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> | 34 <param name="param_force" display="radio" type="boolean" truevalue="-force" falsevalue="" checked="false" optional="True" label="Overwrite tool specific checks" help="(-force) "/> |
38 <data name="param_out" format="mzml"/> | 38 <data name="param_out" format="mzml"/> |
39 </outputs> | 39 </outputs> |
40 <help>Applies thresholdfilter to peak spectra. | 40 <help>Applies thresholdfilter to peak spectra. |
41 | 41 |
42 | 42 |
43 For more information, visit http://ftp.mi.fu-berlin.de/OpenMS/release-documentation/html/TOPP_SpectraFilterNLargest.html</help> | 43 For more information, visit https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/2.3.0/html/TOPP_SpectraFilterNLargest.html</help> |
44 </tool> | 44 </tool> |